Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006316.1 Kokia drynarioides strain JFW-HI SEQ_120891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3572
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Found at i:2929 original size:18 final size:18

Alignment explanation


    Indices: 2898--2932  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2888 TGCATAGAAA

                 *   *        
       2898 ATTTCGTATCGATCTAAT
          1 ATTTCATATAGATCTAAT

                             
       2916 ATTTCATATAGATCTAA
          1 ATTTCATATAGATCTAA

       2933 ATTATTATCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43


Consensus pattern (18 bp):   
ATTTCATATAGATCTAAT
Done.