Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006318.1 Kokia drynarioides strain JFW-HI SEQ_120893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8173
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35


Found at i:1633 original size:18 final size:19

Alignment explanation


    Indices: 1598--1643  Score: 51
    Period size: 18  Copynumber: 2.5  Consensus size: 19

       1588 TTCTGTTATA

                          *    
       1598 GTTGCATTT-GCTCTTGTG
          1 GTTGCATTTGGCTCATGTG

                               
       1616 GTTGCATTTGGCT-ATGTG
          1 GTTGCATTTGGCTCATGTG

            **        
       1634 CCTGCATTTG
          1 GTTGCATTTG

       1644 ATCAGGAATT


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  18   21  0.88
  19    3  0.12

ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46


Consensus pattern (19 bp):   
GTTGCATTTGGCTCATGTG

Found at i:7767 original size:18 final size:19

Alignment explanation


    Indices: 7732--7777  Score: 51
    Period size: 18  Copynumber: 2.5  Consensus size: 19

       7722 TTCTGTTATA

                          *    
       7732 GTTGCATTT-GCTCTTGTG
          1 GTTGCATTTGGCTCATGTG

                               
       7750 GTTGCATTTGGCT-ATGTG
          1 GTTGCATTTGGCTCATGTG

            **        
       7768 CCTGCATTTG
          1 GTTGCATTTG

       7778 ATCAGGAATT


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  18   21  0.88
  19    3  0.12

ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46


Consensus pattern (19 bp):   
GTTGCATTTGGCTCATGTG
Done.