Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006322.1 Kokia drynarioides strain JFW-HI SEQ_120897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8800
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35


Found at i:4869 original size:79 final size:78

Alignment explanation


    Indices: 4737--4900  Score: 274
    Period size: 79  Copynumber: 2.1  Consensus size: 78

       4727 TTTGACCTAG

                     *         *                        *                *   
       4737 GAATTTAGCTTATAAATAGGCTATTTTACAACCTTAGAAAGATATCCATTAAAGTTGAGAATTCT
          1 GAATTTAGCCTATAAATAGACTATTTTACAACCTTAGAAAGATACCCATTAAAGTTGAGAAATCT

                         
       4802 TAATACTTTTCGA
         66 TAATACTTTTCGA

                                                                             
       4815 GAAATTTAGCCTATAAATAGACTATTTTACAACCTTAGAAAGATACCCATTAAAGTTGAGAAATC
          1 G-AATTTAGCCTATAAATAGACTATTTTACAACCTTAGAAAGATACCCATTAAAGTTGAGAAATC

                       *  
       4880 TTAATACTTTTGGA
         65 TTAATACTTTTCGA

                   
       4894 GAATTTA
          1 GAATTTA

       4901 ACGTTTACGT


Statistics
Matches: 80,  Mismatches: 5, Indels: 2
        0.92            0.06        0.02

Matches are distributed among these distances:
  78    7  0.09
  79   73  0.91

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (78 bp):   
GAATTTAGCCTATAAATAGACTATTTTACAACCTTAGAAAGATACCCATTAAAGTTGAGAAATCT
TAATACTTTTCGA
Done.