Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006340.1 Kokia drynarioides strain JFW-HI SEQ_120915, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6985
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35


Found at i:2418 original size:52 final size:52

Alignment explanation


    Indices: 2340--2574  Score: 355
    Period size: 52  Copynumber: 4.5  Consensus size: 52

       2330 TAAATGAAAT

                                                                
       2340 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
          1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG

                 *                                      *       
       2392 AGGTCTGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
          1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG

                           *          *                 *       
       2444 AGGTCCGATGACTATATGTCATCGTGTGTATATGAATCCTTTACGGATTATG
          1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG

                            *          *         *             *
       2496 AGGTCCGATGACTATGCGTCATCGTGACTATATGAATTCTTTACAGATTA-A
          1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG

                         * *      *     
       2547 AGGTCCGATGACTCTATGTCATTGTGAG
          1 AGGTCCGATGACTATGTGTCATCGTGAG

       2575 AATCAAATAC


Statistics
Matches: 166,  Mismatches: 17, Indels: 1
        0.90            0.09        0.01

Matches are distributed among these distances:
  51   23  0.14
  52  143  0.86

ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35


Consensus pattern (52 bp):   
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG

Done.