Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006350.1 Kokia drynarioides strain JFW-HI SEQ_120926, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2710
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.35


Found at i:1073 original size:23 final size:21

Alignment explanation


    Indices: 1047--1101  Score: 56
    Period size: 23  Copynumber: 2.5  Consensus size: 21

       1037 ATTTAGTTAT

                                   
       1047 AATTTAAAAAAATTAATCCTTAA
          1 AATTTAAAAAAATTAATCC-T-A

                  *   *   *      
       1070 AATTTATAAATATTGATCCTA
          1 AATTTAAAAAAATTAATCCTA

             *         
       1091 ATTTTAAAAAA
          1 AATTTAAAAAA

       1102 TTTATAAAAG


Statistics
Matches: 26,  Mismatches: 6, Indels: 2
        0.76            0.18        0.06

Matches are distributed among these distances:
  21    9  0.35
  22    1  0.04
  23   16  0.62

ACGTcount: A:0.53, C:0.07, G:0.02, T:0.38


Consensus pattern (21 bp):   
AATTTAAAAAAATTAATCCTA
Done.