Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006352.1 Kokia drynarioides strain JFW-HI SEQ_120928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9622
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:6200 original size:56 final size:56

Alignment explanation


    Indices: 6114--6229  Score: 223
    Period size: 56  Copynumber: 2.1  Consensus size: 56

       6104 CATTAATCAC

                                                            *       
       6114 TTCACTTTGCTTAAGGGCCCATGTTAAAATACAAGTAAATATAAAGGGGCAATATG
          1 TTCACTTTGCTTAAGGGCCCATGTTAAAATACAAGTAAATATAAAGGGACAATATG

                                                                    
       6170 TTCACTTTGCTTAAGGGCCCATGTTAAAATACAAGTAAATATAAAGGGACAATATG
          1 TTCACTTTGCTTAAGGGCCCATGTTAAAATACAAGTAAATATAAAGGGACAATATG

                
       6226 TTCA
          1 TTCA

       6230 AGGGTGCATT


Statistics
Matches: 59,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  56   59  1.00

ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29


Consensus pattern (56 bp):   
TTCACTTTGCTTAAGGGCCCATGTTAAAATACAAGTAAATATAAAGGGACAATATG
Done.