Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006357.1 Kokia drynarioides strain JFW-HI SEQ_120933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1913
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35


Found at i:1026 original size:22 final size:21

Alignment explanation


    Indices: 1001--1043  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        991 AGTTCCTTGC

                                   
       1001 ATCGCGTCG-ATTTTCTCCTCTA
          1 ATCGC-TCGTATTTT-TCCTCTA

                  *              
       1023 ATCGCTTGTATTTTTCCTCTA
          1 ATCGCTCGTATTTTTCCTCTA

       1044 TTTGTCTAAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 3
        0.83            0.04        0.13

Matches are distributed among these distances:
  21    9  0.47
  22   10  0.53

ACGTcount: A:0.14, C:0.28, G:0.12, T:0.47


Consensus pattern (21 bp):   
ATCGCTCGTATTTTTCCTCTA
Done.