Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006358.1 Kokia drynarioides strain JFW-HI SEQ_120934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2707
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28


Found at i:562 original size:15 final size:15

Alignment explanation


    Indices: 527--564  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        517 CGATTTTTAC

                           
        527 TTTATTTTATTTTTG
          1 TTTATTTTATTTTTG

            **             
        542 GCTATTTTATTTTTG
          1 TTTATTTTATTTTTG

                    
        557 TTTATTTT
          1 TTTATTTT

        565 TCATCTTTTC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76


Consensus pattern (15 bp):   
TTTATTTTATTTTTG
Done.