Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006360.1 Kokia drynarioides strain JFW-HI SEQ_120936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2763
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36


Found at i:1754 original size:15 final size:15

Alignment explanation


    Indices: 1734--1771  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1724 GAAAAGATGA

                           
       1734 AAAATAAACAAAAAT
          1 AAAATAAACAAAAAT

                  **       
       1749 AAAATAGCCAAAAAT
          1 AAAATAAACAAAAAT

                    
       1764 AAAATAAA
          1 AAAATAAA

       1772 GTAAAAATCG


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.76, C:0.08, G:0.03, T:0.13


Consensus pattern (15 bp):   
AAAATAAACAAAAAT
Done.