Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006366.1 Kokia drynarioides strain JFW-HI SEQ_120942, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13358
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33


Found at i:10384 original size:18 final size:18

Alignment explanation


    Indices: 10343--10387  Score: 56
    Period size: 20  Copynumber: 2.4  Consensus size: 18

      10333 ATTAAATAAA

                               
      10343 AATTATTAAAAATGTTGAC
          1 AATTATTAAAAATGTT-AC

                      *        
      10362 AATTATGTAATAATGTT-C
          1 AATTAT-TAAAAATGTTAC

                    
      10380 AATTATTA
          1 AATTATTA

      10388 TTTTTTTTAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  17    2  0.08
  18    7  0.29
  19    6  0.25
  20    9  0.38

ACGTcount: A:0.44, C:0.04, G:0.09, T:0.42


Consensus pattern (18 bp):   
AATTATTAAAAATGTTAC

Found at i:12364 original size:18 final size:19

Alignment explanation


    Indices: 12329--12365  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

      12319 TTTTCCTGTT

                       *       
      12329 AATTTTATAAATATATATA
          1 AATTTTATAAAAATATATA

                               
      12348 AATTTTA-AAAAATATATA
          1 AATTTTATAAAAATATATA

      12366 TTATAAAAGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   10  0.59
  19    7  0.41

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (19 bp):   
AATTTTATAAAAATATATA
Done.