Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006379.1 Kokia drynarioides strain JFW-HI SEQ_120956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45843
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:3526 original size:15 final size:15
Alignment explanation
Indices: 3502--3532 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3492 GACATCAGAA
3502 AAAAAAATTAAAATT
1 AAAAAAATTAAAATT
*
3517 AAAAATATTAAAATT
1 AAAAAAATTAAAATT
3532 A
1 A
3533 TTTTTAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAAAATTAAAATT
Found at i:3677 original size:20 final size:20
Alignment explanation
Indices: 3627--3678 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
3617 ATAATTTTTT
*
3627 AAAATTATAAAAATTATTAA
1 AAAATTATAAAAAGTATTAA
3647 AAAA-TACTAAAAAGTA-TAA
1 AAAATTA-TAAAAAGTATTAA
3666 AAATATTATAAAA
1 AAA-ATTATAAAA
3679 TAATCAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 8 0.29
20 18 0.64
21 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAATTATAAAAAGTATTAA
Found at i:3680 original size:10 final size:9
Alignment explanation
Indices: 3627--3669 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
3617 ATAATTTTTT
3627 AAAATTATA
1 AAAATTATA
3636 AAAATTATTA
1 AAAATTA-TA
*
3646 AAAAATACTA
1 AAAATTA-TA
*
3656 AAAAGTATA
1 AAAATTATA
3665 AAAAT
1 AAAAT
3670 ATTATAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (9 bp):
AAAATTATA
Found at i:3772 original size:18 final size:17
Alignment explanation
Indices: 3749--3784 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
3739 TATATTTCAA
3749 AACTATTAATATATATAT
1 AACTATTAATATAT-TAT
*
3767 AACTATTATTATATTAT
1 AACTATTAATATATTAT
3784 A
1 A
3785 GATTATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
AACTATTAATATATTAT
Found at i:5029 original size:9 final size:9
Alignment explanation
Indices: 5015--5062 Score: 62
Period size: 9 Copynumber: 5.2 Consensus size: 9
5005 GCAAATGATT
5015 TTAAAATTA
1 TTAAAATTA
5024 TTAAAATTA
1 TTAAAATTA
*
5033 TTTTTAAATTA
1 --TTAAAATTA
5044 -TAAAATTA
1 TTAAAATTA
5052 TTAAAATTA
1 TTAAAATTA
5061 TT
1 TT
5063 TTTAAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 7 0.21
9 19 0.56
11 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
TTAAAATTA
Found at i:5035 original size:20 final size:19
Alignment explanation
Indices: 5007--5097 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 19
4997 CCACATCAGC
*
5007 AAATGATTTTAAAATTATTA
1 AAATTATTTTAAAATTA-TA
*
5027 AAATTATTTTTAAATTATA
1 AAATTATTTTAAAATTATA
*
5046 AAATTA--TTAAAATTATTTTT
1 AAATTATTTTAAAATTA---TA
5066 AAATTATTTTTTAAAA-TATA
1 AAATTA--TTTTAAAATTATA
5086 AAATTATTTTAA
1 AAATTATTTTAA
5098 TATTTTAATC
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
17 8 0.14
18 6 0.10
19 8 0.14
20 29 0.49
23 2 0.03
24 6 0.10
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (19 bp):
AAATTATTTTAAAATTATA
Found at i:5056 original size:28 final size:28
Alignment explanation
Indices: 5016--5072 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
5006 CAAATGATTT
5016 TAAAATTATTAAAATTATTTTTAAATTA
1 TAAAATTATTAAAATTATTTTTAAATTA
5044 TAAAATTATTAAAATTATTTTTAAATTA
1 TAAAATTATTAAAATTATTTTTAAATTA
5072 T
1 T
5073 TTTTTAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
TAAAATTATTAAAATTATTTTTAAATTA
Found at i:5078 original size:40 final size:37
Alignment explanation
Indices: 5015--5093 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 37
5005 GCAAATGATT
*
5015 TTAAAATTATTAAAATTATTTTTAAATTATAAAATTA
1 TTAAAATTATTAAAATTATTTTTAAAATATAAAATTA
*
5052 TTAAAATTATTTTTAAATTATTTTTTAAAATATAAAATTA
1 TTAAAATTA--TTAAAATTA-TTTTTAAAATATAAAATTA
5092 TT
1 TT
5094 TTAATATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 9 0.24
39 8 0.22
40 20 0.54
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (37 bp):
TTAAAATTATTAAAATTATTTTTAAAATATAAAATTA
Found at i:6035 original size:20 final size:19
Alignment explanation
Indices: 6001--6042 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
5991 AAATTGAAAA
*
6001 TTAAAATTATTTAATAATT
1 TTAAAATAATTTAATAATT
6020 TTAAAATAATTTTAATAATT
1 TTAAAATAA-TTTAATAATT
6040 TTA
1 TTA
6043 TATTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAAAATAATTTAATAATT
Found at i:6036 original size:9 final size:9
Alignment explanation
Indices: 6010--6068 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 9
6000 ATTAAAATTA
6010 TTTAATAAT
1 TTTAATAAT
6019 TTTAAAATAAT
1 TTT--AATAAT
6030 TTTAATAAT
1 TTTAATAAT
6039 TTT-AT-AT
1 TTTAATAAT
6046 TTTAA-AA-
1 TTTAATAAT
6053 ---AATAAT
1 TTTAATAAT
6059 TTTAATAAT
1 TTTAATAAT
6068 T
1 T
6069 AAAACAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 18
0.69 0.00 0.31
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
7 5 0.12
8 4 0.10
9 19 0.46
11 9 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TTTAATAAT
Found at i:6070 original size:20 final size:20
Alignment explanation
Indices: 6033--6072 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6023 AAATAATTTT
*
6033 AATAATTTTATATTTTAAAA
1 AATAATTTTATATATTAAAA
6053 AATAATTTTA-ATAATTAAAA
1 AATAATTTTATAT-ATTAAAA
6073 CAAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATTTTATATATTAAAA
Found at i:14384 original size:61 final size:62
Alignment explanation
Indices: 14311--14430 Score: 156
Period size: 61 Copynumber: 2.0 Consensus size: 62
14301 GTATTTTTGG
* *
14311 GTGTTGGTCATGCAAT-GACCGACACCCCCTT-TT-TCAAATAAAAAATTTTCAAATTTTTTTT
1 GTGTTGGCCATGCAATAG-CCGACA-CCCCTTGTTCTCAAATAAAAAAATTTCAAATTTTTTTT
* **
14372 GTGTTGGCCATGCAATAGCCGACACCTCTTGTTCTCGGATAAAAAAATTTCAAATTTTT
1 GTGTTGGCCATGCAATAGCCGACACCCCTTGTTCTCAAATAAAAAAATTTCAAATTTTT
14431 AGTACTAACG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
60 5 0.10
61 23 0.45
62 23 0.45
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (62 bp):
GTGTTGGCCATGCAATAGCCGACACCCCTTGTTCTCAAATAAAAAAATTTCAAATTTTTTTT
Found at i:14450 original size:2 final size:2
Alignment explanation
Indices: 14443--14471 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14433 TACTAACGGT
14443 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14472 CTGGTGCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15089 original size:118 final size:115
Alignment explanation
Indices: 14920--15358 Score: 420
Period size: 121 Copynumber: 3.7 Consensus size: 115
14910 TGACTGAATA
* * * * * *
14920 CATGGCTAACACCAAAAAAATTTGAAATTTTTTTACTTGAAAAAGGAGGTGTCGGCCATTGC-AT
1 CATGGCCAACA-CAAAAAATTTTGAAATTTTTTTTCGTCAAAAAGGGGGTGTCGGCCA-TGCAAT
*
14984 GGCCAACACCCAAAAATGTAATTTTTTTATCCGAGAAAAGGGGTGTCGGTCA-TG
64 GGCCAACACCCAAAAATGCAATTTTTTTAT-C-A-AAAAGGGGTGTCGGTCATTG
* * *
15038 CAATGGCCAATATCAAAAAATTTTGAAATTTTTTTTC-TCAAAAAGGGGGTGTCGGTCACGCAAT
1 C-ATGGCCAACA-CAAAAAATTTTGAAATTTTTTTTCGTCAAAAAGGGGGTGTCGGCCATGCAAT
** * * **
15102 GATCAACACCCAAAAATGCAATTTTTTTTTTTCTAAAAAATGAGGTGTCAATCATTG
64 GGCCAACACCCAAAAATGCAA--TTTTTTTATC--AAAAA-GGGGTGTCGGTCATTG
** * *
15159 CATGATCAACACCAAAAAATTTTGAAATTTTTTTTTC-TCAAAAAGGGGGTATCGGTCATGCAAT
1 CATGGCCAACA-CAAAAAATTTTGAAA-TTTTTTTTCGTCAAAAAGGGGGTGTCGGCCATGCAAT
* * *
15223 GGCCAACACCTAAAAATACAATTTTTTTCTCAAAAAGTGGGTGTCGG-CTATTG
64 GGCCAACACCCAAAAATGCAATTTTTTTATCAAAAAG-GGGTGTCGGTC-ATTG
* *
15276 CATGGCCAACACAAAAAAATTTTGAAATTTTTTTTCGGACAAAAAAGGAGGGGGTGTCAGCCATG
1 CATGGCCAACAC-AAAAAATTTTGAAATTTTTTTTC-GTC--AAAA--AGGGGGTGTCGGCCATG
15341 CAATGGCCAACACCCAAA
60 CAATGGCCAACACCCAAA
15359 TTTTTTTTTC
Statistics
Matches: 266, Mismatches: 38, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
116 12 0.05
117 40 0.15
118 40 0.15
119 44 0.17
120 45 0.17
121 54 0.20
122 31 0.12
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (115 bp):
CATGGCCAACACAAAAAATTTTGAAATTTTTTTTCGTCAAAAAGGGGGTGTCGGCCATGCAATGG
CCAACACCCAAAAATGCAATTTTTTTATCAAAAAGGGGTGTCGGTCATTG
Found at i:15090 original size:60 final size:59
Alignment explanation
Indices: 14920--15311 Score: 308
Period size: 60 Copynumber: 6.6 Consensus size: 59
14910 TGACTGAATA
* * * * *
14920 CATGGCTAACACCAAAAAAATTTGAAATTTTTTTACTTGAAAAAGGAGGTGTCGGCCATTG
1 CATGGCCAACACC-AAAAAATTTGAAATTTTTTTTC-TCAAAAAGGGGGTGTCGGTCATTG
* *
14981 CATGGCCAACACCCAAAAA--TGTAATTTTTTTATC-CGAGAAAA-GGGGTGTCGGTCA-TG
1 CATGGCCAACACCAAAAAATTTGAAATTTTTTT-TCTC-A-AAAAGGGGGTGTCGGTCATTG
* * *
15038 CAATGGCCAATATCAAAAAATTTTGAAATTTTTTTTCTCAAAAAGGGGGTGTCGGTCA-CG
1 C-ATGGCCAACACCAAAAAA-TTTGAAATTTTTTTTCTCAAAAAGGGGGTGTCGGTCATTG
** * * * * * **
15098 CAATGATCAACACCCAAAAA--TGCAATTTTTTTTTTTCTAAAAAATGAGGTGTCAATCATTG
1 C-ATGGCCAACACCAAAAAATTTG-AA--ATTTTTTTTCTCAAAAAGGGGGTGTCGGTCATTG
** *
15159 CATGATCAACACCAAAAAATTTTGAAATTTTTTTTTCTCAAAAAGGGGGTATCGGTCA-TG
1 CATGGCCAACACCAAAAAA-TTTGAAA-TTTTTTTTCTCAAAAAGGGGGTGTCGGTCATTG
* *
15219 CAATGGCCAACACCTAAAAA--T-ACAA-TTTTTTTCTCAAAAAGTGGGTGTCGG-CTATTG
1 C-ATGGCCAACACCAAAAAATTTGA-AATTTTTTTTCTCAAAAAGGGGGTGTCGGTC-ATTG
*
15276 CATGGCCAACACAAAAAAATTTTGAAATTTTTTTTC
1 CATGGCCAACACCAAAAAA-TTTGAAATTTTTTTTC
15312 GGACAAAAAA
Statistics
Matches: 266, Mismatches: 39, Indels: 53
0.74 0.11 0.15
Matches are distributed among these distances:
55 1 0.00
56 41 0.15
57 9 0.03
58 43 0.16
59 12 0.05
60 91 0.34
61 65 0.24
62 2 0.01
63 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (59 bp):
CATGGCCAACACCAAAAAATTTGAAATTTTTTTTCTCAAAAAGGGGGTGTCGGTCATTG
Found at i:15365 original size:117 final size:113
Alignment explanation
Indices: 15125--15368 Score: 244
Period size: 117 Copynumber: 2.1 Consensus size: 113
15115 AAATGCAATT
* *
15125 TTTTTTTTTCTAAAAAATGAGGTGTCAATCATTGCATGATCAACACCAAAAAATTTTGAAATTTT
1 TTTTTTTTTCTAAAAAATGAGGTGTCAATCATTGCATGACCAACACAAAAAAATTTTGAAATTTT
* * *
15190 TTTTTCTCAAAAAGGGGGTATCGGTCATGCAATGGCCAACACCTAAAAA
66 TTTTTCACAAAAAGGGGGTATCAGCCATGCAATGGCCAACACC-AAAAA
* * ** *
15239 TACAATTTTTTTCTCAAAAAGTG-GGTGTC-GGCTATTGCATGGCCAACACAAAAAAATTTTGAA
1 T---TTTTTTTTCT-AAAAAATGAGGTGTCAATC-ATTGCATGACCAACACAAAAAAATTTTGAA
* *
15302 A-TTTTTTTTCGGACAAAAAAGGAGGGGGTGTCAGCCATGCAATGGCCAACACC-CAAA
61 ATTTTTTTTTC--AC--AAAA--AGGGGGTATCAGCCATGCAATGGCCAACACCAAAAA
15359 TTTTTTTTTC
1 TTTTTTTTTC
15369 CATATTCTCG
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
114 1 0.01
116 10 0.09
117 51 0.48
118 8 0.08
120 8 0.08
122 28 0.26
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (113 bp):
TTTTTTTTTCTAAAAAATGAGGTGTCAATCATTGCATGACCAACACAAAAAAATTTTGAAATTTT
TTTTTCACAAAAAGGGGGTATCAGCCATGCAATGGCCAACACCAAAAA
Found at i:17270 original size:6 final size:6
Alignment explanation
Indices: 17259--17302 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
17249 CATGGGAGAT
17259 TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TT
1 TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TTCGGG TT
17303 GCATTTGTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TTCGGG
Found at i:21807 original size:32 final size:31
Alignment explanation
Indices: 21765--21824 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 31
21755 AAAAAATGTC
* *
21765 TAAAATTTTTAAATATTAAAATAATATAATA
1 TAAAATTTTTAAAAATTAAAAAAATATAATA
21796 TAAATATTTTTAAAAATTAAAAAAATATA
1 TAAA-ATTTTTAAAAATTAAAAAAATATA
21825 GGCCGGCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 4 0.15
32 22 0.85
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (31 bp):
TAAAATTTTTAAAAATTAAAAAAATATAATA
Found at i:31337 original size:12 final size:12
Alignment explanation
Indices: 31320--31368 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
31310 ACAACATCCA
*
31320 AACAACCAAAAT
1 AACAACAAAAAT
31332 AACAACAAAAAT
1 AACAACAAAAAT
*
31344 AACAGC--AAA-
1 AACAACAAAAAT
31353 AACAACAAAAAT
1 AACAACAAAAAT
31365 AACA
1 AACA
31369 GTAATCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 5 0.16
10 3 0.10
11 3 0.10
12 20 0.65
ACGTcount: A:0.71, C:0.20, G:0.02, T:0.06
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:31398 original size:19 final size:19
Alignment explanation
Indices: 31374--31456 Score: 103
Period size: 19 Copynumber: 4.3 Consensus size: 19
31364 TAACAGTAAT
*
31374 CAAAACAGTAAAAAAGTAC
1 CAAAACAGTAAAAAAGCAC
* *
31393 CAAAACAGTAAAAAAACAT
1 CAAAACAGTAAAAAAGCAC
* *
31412 CAAAACAGCAAAAAAAACAAC
1 CAAAACAG-TAAAAAAGC-AC
31433 CAAAACAGTAAAAAAGCAC
1 CAAAACAGTAAAAAAGCAC
31452 CAAAA
1 CAAAA
31457 TAATAATATA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
19 31 0.56
20 15 0.27
21 9 0.16
ACGTcount: A:0.67, C:0.19, G:0.07, T:0.06
Consensus pattern (19 bp):
CAAAACAGTAAAAAAGCAC
Found at i:31426 original size:21 final size:21
Alignment explanation
Indices: 31391--31447 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
31381 GTAAAAAAGT
*
31391 ACCAAAACAG-TAAAAAAAC-
1 ACCAAAACAGCAAAAAAAACA
*
31410 ATCAAAACAGCAAAAAAAACA
1 ACCAAAACAGCAAAAAAAACA
*
31431 ACCAAAACAGTAAAAAA
1 ACCAAAACAGCAAAAAA
31448 GCACCAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.28
20 8 0.25
21 15 0.47
ACGTcount: A:0.70, C:0.19, G:0.05, T:0.05
Consensus pattern (21 bp):
ACCAAAACAGCAAAAAAAACA
Found at i:36425 original size:31 final size:30
Alignment explanation
Indices: 36378--36453 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
36368 ACGGGTGACC
* ***
36378 AAAATGAAAATGTTTTTAACGGTAGCGCCT
1 AAAATGAAAATATTTTTAACCACAGCGCCT
*
36408 AAAATGAAAATAATTTTTAACCACAGTGCCT
1 AAAATGAAAAT-ATTTTTAACCACAGCGCCT
36439 AAAATGAAAAT-TTTT
1 AAAATGAAAATATTTT
36454 ATGTTTTAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
29 4 0.10
30 11 0.28
31 25 0.62
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (30 bp):
AAAATGAAAATATTTTTAACCACAGCGCCT
Done.