Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000638.1 Kokia drynarioides strain JFW-HI SEQ_111606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 698

Length: 1164
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44


Found at i:527 original size:26 final size:26

Alignment explanation


    Indices: 497--550  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        487 ATAACTATAC

                                      
        497 GTATATTGGAAACATTCAACTAAAAT
          1 GTATATTGGAAACATTCAACTAAAAT

                         *            
        523 GTATATTGGAAACGTTCAACTAAAAT
          1 GTATATTGGAAACATTCAACTAAAAT

              
        549 GT
          1 GT

        551 TGATTCAAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31


Consensus pattern (26 bp):   
GTATATTGGAAACATTCAACTAAAAT
Done.