Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006382.1 Kokia drynarioides strain JFW-HI SEQ_120959, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2551
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40


Found at i:1094 original size:27 final size:25

Alignment explanation


    Indices: 1064--1127  Score: 74
    Period size: 27  Copynumber: 2.4  Consensus size: 25

       1054 CACTTATATA

                                   *   
       1064 ATTTTTATTTATGTTTATTTCATCTTT
          1 ATTTTT-TTTATGTTTATTT-ATATTT

                     *                
       1091 ATTTGTTTTCATGTTTATTTATATTT
          1 ATTT-TTTTTATGTTTATTTATATTT

                       
       1117 ATGTTTTTTTA
          1 AT-TTTTTTTA

       1128 CACATTCCCC


Statistics
Matches: 32,  Mismatches: 3, Indels: 5
        0.80            0.08        0.12

Matches are distributed among these distances:
  26   12  0.38
  27   18  0.56
  28    2  0.06

ACGTcount: A:0.19, C:0.05, G:0.06, T:0.70


Consensus pattern (25 bp):   
ATTTTTTTTATGTTTATTTATATTT

Found at i:1120 original size:16 final size:16

Alignment explanation


    Indices: 1077--1127  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1067 TTTATTTATG

                       *    
       1077 TTTA-TTTCATCTTTA
          1 TTTATTTTCATGTTTA

               *            
       1092 TTTGTTTTCATGTTTA
          1 TTTATTTTCATGTTTA

                            *
       1108 TTTATATTT-ATGTTTT
          1 TTTAT-TTTCATGTTTA

                
       1124 TTTA
          1 TTTA

       1128 CACATTCCCC


Statistics
Matches: 30,  Mismatches: 4, Indels: 3
        0.81            0.11        0.08

Matches are distributed among these distances:
  15    3  0.10
  16   24  0.80
  17    3  0.10

ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71


Consensus pattern (16 bp):   
TTTATTTTCATGTTTA
Done.