Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006383.1 Kokia drynarioides strain JFW-HI SEQ_120960, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12193
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:9704 original size:52 final size:52

Alignment explanation


    Indices: 9626--9731  Score: 212
    Period size: 52  Copynumber: 2.0  Consensus size: 52

       9616 AACAAGTTAC

                                                                
       9626 TATGGATTTTGTTATAGGACTTTCGGTAACCCCGAGAAAGAAAGATTCGATT
          1 TATGGATTTTGTTATAGGACTTTCGGTAACCCCGAGAAAGAAAGATTCGATT

                                                                
       9678 TATGGATTTTGTTATAGGACTTTCGGTAACCCCGAGAAAGAAAGATTCGATT
          1 TATGGATTTTGTTATAGGACTTTCGGTAACCCCGAGAAAGAAAGATTCGATT

              
       9730 TA
          1 TA

       9732 GGTAATTATA


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  52   54  1.00

ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33


Consensus pattern (52 bp):   
TATGGATTTTGTTATAGGACTTTCGGTAACCCCGAGAAAGAAAGATTCGATT
Done.