Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006385.1 Kokia drynarioides strain JFW-HI SEQ_120962, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4657
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:742 original size:5 final size:5

Alignment explanation


    Indices: 734--767  Score: 68
    Period size: 5  Copynumber: 6.8  Consensus size: 5

        724 AATGAGCAGA

                                                    
        734 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAG
          1 GAAGG GAAGG GAAGG GAAGG GAAGG GAAGG GAAG

        768 AAAGGGGAGT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   29  1.00

ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00


Consensus pattern (5 bp):   
GAAGG

Found at i:775 original size:15 final size:15

Alignment explanation


    Indices: 734--773  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        724 AATGAGCAGA

                 *         
        734 GAAGGGAAGGGAAGG
          1 GAAGGAAAGGGAAGG

                 *         
        749 GAAGGGAAGGGAAGG
          1 GAAGGAAAGGGAAGG

                       
        764 GAA-GAAAGGG
          1 GAAGGAAAGGG

        774 GAGTGTGAAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  14    6  0.25
  15   18  0.75

ACGTcount: A:0.42, C:0.00, G:0.57, T:0.00


Consensus pattern (15 bp):   
GAAGGAAAGGGAAGG
Done.