Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006386.1 Kokia drynarioides strain JFW-HI SEQ_120963, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5886
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:3531 original size:24 final size:24

Alignment explanation


    Indices: 3503--3551  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3493 AATATACCAG

                           *        
       3503 TAACAACATCAAGCGTGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

                                    
       3527 TAACAACATCAAGCGCGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

             
       3551 T
          1 T

       3552 CTCTCTTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20


Consensus pattern (24 bp):   
TAACAACATCAAGCGCGGTAGCAT

Found at i:4233 original size:28 final size:28

Alignment explanation


    Indices: 4193--4249  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       4183 TCTTCACGAC

                                        
       4193 TAAGACAAGAAAACCTAGGTTTTTCCAT
          1 TAAGACAAGAAAACCTAGGTTTTTCCAT

                                        
       4221 TAAGACAAGAAAACCTAGGTTTTTCCAT
          1 TAAGACAAGAAAACCTAGGTTTTTCCAT

             
       4249 T
          1 T

       4250 GATGAACTTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30


Consensus pattern (28 bp):   
TAAGACAAGAAAACCTAGGTTTTTCCAT

Found at i:4701 original size:24 final size:24

Alignment explanation


    Indices: 4673--4722  Score: 91
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       4663 GTATACTGGT

                                    
       4673 TAACCATTCTAGGCTCGTAAGAGC
          1 TAACCATTCTAGGCTCGTAAGAGC

                      *             
       4697 TAACCATTCTGGGCTCGTAAGAGC
          1 TAACCATTCTAGGCTCGTAAGAGC

              
       4721 TA
          1 TA

       4723 CTCGTAAGAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26


Consensus pattern (24 bp):   
TAACCATTCTAGGCTCGTAAGAGC
Done.