Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006390.1 Kokia drynarioides strain JFW-HI SEQ_120967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34


Found at i:555 original size:195 final size:194

Alignment explanation


    Indices: 171--618  Score: 517
    Period size: 195  Copynumber: 2.3  Consensus size: 194

        161 TACTAGTACT

                           *       *            *       *   *         *    * 
        171 CGATGCTGCTCACACAAGCTGTCAAGGACTCGCAACGTATGCAGCACCCCAGCCATCGGTACAGT
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCGATACAAT

            *        *                          *                   *        
        236 GCCTATCTGTACTATAAACTATTCCCTAACAATGCTGCTCACACGAGCTGTCGAGAGTATGCATA
         66 ACCTA-CTGCACTATAAACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCATA

                   * * *                                                 *   
        301 AAGCATAGTCCCAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGAGTCA
        130 AAGCATAATACAAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGACTCA

                       *      *            *                             *   
        366 CGATGCTGCTCTCACGAGTTGTCGAGGACTCACAACATATGCAGTACCTCAGCCATCGATATAAT
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCGATACAAT

             *                 *         *                                   
        431 ATCTA-TGCA-TAT-AACTGTTCCCTAACGATGCTCCTCACACGAGCTGTCGAGAATATGCACTT
         66 ACCTACTGCACTATAAACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCA--T

             *          *           *     *           *    * * *             
        493 ATA-CATAAATATAAGCCATCGTAGGGCCTGTAATCCATTCTTGGATTCTTTTCTCATTTCCCGA
        129 AAAGCAT-AATACAAGCCATCGTAAGGCCTATAATCCATT-TAGGATCCATATCTC-TTTCCCGA

                
        557 CTCA
        191 CTCA

            *      *                        *                         
        561 TGATGCTACTCACACGAGCTGTCGAGGACTCGTAACATATGCAGTACCTCAGCCATCG
          1 CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCG

        619 CGTCGGTTTC


Statistics
Matches: 212,  Mismatches: 36, Indels: 10
        0.82            0.14        0.04

Matches are distributed among these distances:
 191   43  0.20
 192    6  0.03
 193   32  0.15
 194   11  0.05
 195  120  0.57

ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26


Consensus pattern (194 bp):   
CGATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCAGTACCTCAGCCATCGATACAAT
ACCTACTGCACTATAAACTATTCCCTAACAATGCTCCTCACACGAGCTGTCGAGAATATGCATAA
AGCATAATACAAGCCATCGTAAGGCCTATAATCCATTTAGGATCCATATCTCTTTCCCGACTCA
Done.