Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000064.1 Kokia drynarioides strain JFW-HI SEQ_110609, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 629

Length: 1049
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40


Found at i:112 original size:10 final size:11

Alignment explanation


    Indices: 87--113  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

         77 TGTCAGGTTT

                       
         87 TTTTTGTCGTA
          1 TTTTTGTCGTA

                       
         98 TTTTTGTCGTA
          1 TTTTTGTCGTA

                 
        109 TTTTT
          1 TTTTT

        114 TTGAAAAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.07, C:0.07, G:0.15, T:0.70


Consensus pattern (11 bp):   
TTTTTGTCGTA

Found at i:385 original size:14 final size:15

Alignment explanation


    Indices: 366--394  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        356 ATTGGAGGAT

                           
        366 AAAAAA-TAAAATAA
          1 AAAAAATTAAAATAA

                           
        380 AAAAAATTAAAATAA
          1 AAAAAATTAAAATAA

        395 GAAGGACAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (15 bp):   
AAAAAATTAAAATAA
Done.