Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006400.1 Kokia drynarioides strain JFW-HI SEQ_120977, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3008
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29


Found at i:2901 original size:15 final size:15

Alignment explanation


    Indices: 2877--2932  Score: 51
    Period size: 15  Copynumber: 3.6  Consensus size: 15

       2867 GATGAAGAAT

                 *         
       2877 AATAATAATTTTAAA
          1 AATAAAAATTTTAAA

                        *    
       2892 AATAAAAATTAGGTAAA
          1 AATAAAAATT--TTAAA

                 *          
       2909 AATAATAA-TTTAATA
          1 AATAAAAATTTTAA-A

                     
       2924 AATAAAAAT
          1 AATAAAAAT

       2933 AAGATAGAAT


Statistics
Matches: 32,  Mismatches: 5, Indels: 7
        0.73            0.11        0.16

Matches are distributed among these distances:
  14    3  0.09
  15   17  0.53
  16    1  0.03
  17   11  0.34

ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32


Consensus pattern (15 bp):   
AATAAAAATTTTAAA
Done.