Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006401.1 Kokia drynarioides strain JFW-HI SEQ_120978, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4950
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37


Found at i:3868 original size:31 final size:31

Alignment explanation


    Indices: 3772--3880  Score: 102
    Period size: 31  Copynumber: 3.5  Consensus size: 31

       3762 TTGGTACTTG

                            **              
       3772 AACTTGACATTTTTTTAATAATTTAATATCTA
          1 AACTTGACA-TTTTTTCCTAATTTAATATCTA

                                *     *        
       3804 AA-TT--C-TGTTTTGGTCCAAATTTGATAT-TCA
          1 AACTTGACAT-TTTT--TCCTAATTTAATATCT-A

                                           
       3834 AACTTGACATTTTTTCCTAATTTAATATCTA
          1 AACTTGACATTTTTTCCTAATTTAATATCTA

                            
       3865 AACTTGACATTTTTTC
          1 AACTTGACATTTTTTC

       3881 TTAAGTTGGT


Statistics
Matches: 62,  Mismatches: 6, Indels: 19
        0.71            0.07        0.22

Matches are distributed among these distances:
  27    1  0.02
  28    4  0.06
  29    2  0.03
  30   13  0.21
  31   33  0.53
  32    3  0.05
  33    5  0.08
  34    1  0.02

ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49


Consensus pattern (31 bp):   
AACTTGACATTTTTTCCTAATTTAATATCTA
Done.