Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006403.1 Kokia drynarioides strain JFW-HI SEQ_120980, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7043
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34


Found at i:1278 original size:22 final size:22

Alignment explanation


    Indices: 1253--1298  Score: 65
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1243 TTGCTCCGTA

                            *     
       1253 TTCTTGCTGTTTTCCTGCTATT
          1 TTCTTGCTGTTTTCCTACTATT

                  *       *       
       1275 TTCTTGTTGTTTTCTTACTATT
          1 TTCTTGCTGTTTTCCTACTATT

              
       1297 TT
          1 TT

       1299 GTTACCATTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.07, C:0.17, G:0.11, T:0.65


Consensus pattern (22 bp):   
TTCTTGCTGTTTTCCTACTATT

Found at i:1961 original size:37 final size:37

Alignment explanation


    Indices: 1908--1981  Score: 130
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1898 TTCTAGCAAG

                       *             *           
       1908 TCCATTCATTGTGGCCAATCTTTGCTTTCAGTCGATA
          1 TCCATTCATTGAGGCCAATCTTTGCATTCAGTCGATA

                                                 
       1945 TCCATTCATTGAGGCCAATCTTTGCATTCAGTCGATA
          1 TCCATTCATTGAGGCCAATCTTTGCATTCAGTCGATA

       1982 CTCGCACATA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   35  1.00

ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38


Consensus pattern (37 bp):   
TCCATTCATTGAGGCCAATCTTTGCATTCAGTCGATA
Done.