Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006410.1 Kokia drynarioides strain JFW-HI SEQ_120987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1411
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.36


Found at i:645 original size:23 final size:23

Alignment explanation


    Indices: 615--671  Score: 87
    Period size: 23  Copynumber: 2.5  Consensus size: 23

        605 TGACGTGGCA

                     *        *    
        615 TCCAGTCAGTAGCTTCTAGAAGG
          1 TCCAGTCAGCAGCTTCTAAAAGG

                                   
        638 TCCAGTCAGCAGCTTCTAAAAGG
          1 TCCAGTCAGCAGCTTCTAAAAGG

              *        
        661 TCTAGTCAGCA
          1 TCCAGTCAGCA

        672 AAGATGGACG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  23   31  1.00

ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25


Consensus pattern (23 bp):   
TCCAGTCAGCAGCTTCTAAAAGG

Found at i:747 original size:32 final size:32

Alignment explanation


    Indices: 711--777  Score: 125
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        701 AAATTCAAAA

                        *                   
        711 TTAGAAATTATCTTTTGTTTTTAGGATTTAAT
          1 TTAGAAATTATCCTTTGTTTTTAGGATTTAAT

                                            
        743 TTAGAAATTATCCTTTGTTTTTAGGATTTAAT
          1 TTAGAAATTATCCTTTGTTTTTAGGATTTAAT

               
        775 TTA
          1 TTA

        778 AATATTTTCA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.28, C:0.04, G:0.12, T:0.55


Consensus pattern (32 bp):   
TTAGAAATTATCCTTTGTTTTTAGGATTTAAT
Done.