Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006412.1 Kokia drynarioides strain JFW-HI SEQ_120990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5165
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:2234 original size:21 final size:21

Alignment explanation


    Indices: 2210--2252  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2200 CATCTCAACC

                         *       
       2210 TGTTCGTGATGCGTAACCACA
          1 TGTTCGTGATGCGCAACCACA

                                 
       2231 TGTTCGTGATGCGCAACCACA
          1 TGTTCGTGATGCGCAACCACA

             
       2252 T
          1 T

       2253 TTAAAGGGCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28


Consensus pattern (21 bp):   
TGTTCGTGATGCGCAACCACA
Done.