Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006417.1 Kokia drynarioides strain JFW-HI SEQ_120998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2381
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33


Found at i:1469 original size:20 final size:22

Alignment explanation


    Indices: 1425--1471  Score: 62
    Period size: 20  Copynumber: 2.2  Consensus size: 22

       1415 AAAATTTCCT

                               ** 
       1425 TTTTTTTAAAACAAAATCACTA
          1 TTTTTTTAAAACAAAATCAAAA

                                  
       1447 TTTTTTT-AAA-AAAATCAAAA
          1 TTTTTTTAAAACAAAATCAAAA

                 
       1467 TTTTT
          1 TTTTT

       1472 ATTTCGAAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  20   13  0.57
  21    3  0.13
  22    7  0.30

ACGTcount: A:0.45, C:0.09, G:0.00, T:0.47


Consensus pattern (22 bp):   
TTTTTTTAAAACAAAATCAAAA

Found at i:1666 original size:19 final size:19

Alignment explanation


    Indices: 1638--1681  Score: 61
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1628 GAAATAGTTA

                 *             
       1638 AAAAAATTAAACTTTATTT
          1 AAAAATTTAAACTTTATTT

                           *   
       1657 AAAAATTTAAACTTTTTTT
          1 AAAAATTTAAACTTTATTT

            *     
       1676 TAAAAT
          1 AAAAAT

       1682 GCTTAAAAAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45


Consensus pattern (19 bp):   
AAAAATTTAAACTTTATTT
Done.