Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006424.1 Kokia drynarioides strain JFW-HI SEQ_121005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18105
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:4716 original size:24 final size:24

Alignment explanation


    Indices: 4689--4738  Score: 57
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       4679 ATTATTTTTA

                                     
       4689 ATTTAATAT-TTAATAATATTATAT
          1 ATTTAATATATTAA-AATATTATAT

                *  *         *      
       4713 ATTTTATTTATTAAAATTTTATAT
          1 ATTTAATATATTAAAATATTATAT

              
       4737 AT
          1 AT

       4739 AATCATCTTA


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  24   18  0.82
  25    4  0.18

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (24 bp):   
ATTTAATATATTAAAATATTATAT

Found at i:4735 original size:22 final size:22

Alignment explanation


    Indices: 4695--4736  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       4685 TTTAATTTAA

                      *           
       4695 TATTTAATAATATTATATATTT
          1 TATTTAATAAAATTATATATTT

                  *       *     
       4717 TATTTATTAAAATTTTATAT
          1 TATTTAATAAAATTATATAT

       4737 ATAATCATCT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (22 bp):   
TATTTAATAAAATTATATATTT

Found at i:13055 original size:22 final size:21

Alignment explanation


    Indices: 13010--13053  Score: 72
    Period size: 21  Copynumber: 2.1  Consensus size: 21

      13000 TTTAACTATT

                                 
      13010 AATTTTTTTAAAAAATAATTA
          1 AATTTTTTTAAAAAATAATTA

                                  
      13031 AATTATTTTTAAAAAA-AATTA
          1 AATT-TTTTTAAAAAATAATTA

              
      13052 AA
          1 AA

      13054 ATATCAACTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  21   11  0.50
  22   11  0.50

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (21 bp):   
AATTTTTTTAAAAAATAATTA
Done.