Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006428.1 Kokia drynarioides strain JFW-HI SEQ_121010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2129
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32


Found at i:1495 original size:23 final size:23

Alignment explanation


    Indices: 1464--1511  Score: 87
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1454 ATGCATCAAG

                *                  
       1464 TCACCTTCCTCCGAAATTAAGCT
          1 TCACATTCCTCCGAAATTAAGCT

                                   
       1487 TCACATTCCTCCGAAATTAAGCT
          1 TCACATTCCTCCGAAATTAAGCT

              
       1510 TC
          1 TC

       1512 CATGGCAACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.27, C:0.33, G:0.08, T:0.31


Consensus pattern (23 bp):   
TCACATTCCTCCGAAATTAAGCT
Done.