Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000643.1 Kokia drynarioides strain JFW-HI SEQ_111616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5820
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:1181 original size:24 final size:24

Alignment explanation


    Indices: 1149--1200  Score: 86
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       1139 AGCCCGTACA

                *                   
       1149 GTTATCTCTTACGAGCCCAGAATG
          1 GTTAGCTCTTACGAGCCCAGAATG

                             *      
       1173 GTTAGCTCTTACGAGCCTAGAATG
          1 GTTAGCTCTTACGAGCCCAGAATG

                
       1197 GTTA
          1 GTTA

       1201 ACCAGTATAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Consensus pattern (24 bp):   
GTTAGCTCTTACGAGCCCAGAATG

Found at i:2303 original size:24 final size:24

Alignment explanation


    Indices: 2271--2319  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2261 AGCAAGAGAG

                     *              
       2271 AATGCTACCGCGCTTGATGTTGTT
          1 AATGCTACCACGCTTGATGTTGTT

                                    
       2295 AATGCTACCACGCTTGATGTTGTT
          1 AATGCTACCACGCTTGATGTTGTT

             
       2319 A
          1 A

       2320 CTGGTATATT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37


Consensus pattern (24 bp):   
AATGCTACCACGCTTGATGTTGTT
Done.