Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006432.1 Kokia drynarioides strain JFW-HI SEQ_121014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3595
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35


Found at i:1735 original size:14 final size:14

Alignment explanation


    Indices: 1711--1745  Score: 52
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1701 AAAGTTCATG

                           
       1711 TATATTTTTTATATT
          1 TATA-TTTTTATATT

                       *  
       1726 TATATTTTTATTTT
          1 TATATTTTTATATT

                  
       1740 TATATT
          1 TATATT

       1746 GCTTGTAACA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   15  0.79
  15    4  0.21

ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74


Consensus pattern (14 bp):   
TATATTTTTATATT
Done.