Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006450.1 Kokia drynarioides strain JFW-HI SEQ_121033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5717
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Found at i:409 original size:216 final size:216
Alignment explanation
Indices: 1--2093 Score: 1836
Period size: 216 Copynumber: 9.7 Consensus size: 216
* *
1 CATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * ** *
66 GGTTCTTAGAGGAAC-TTCTGTACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTCGTTGCTT
66 GGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTT
* * * * * *
130 AAAGTATTCAAGATGATCCATTCTTTCGAGC-ATTATTCCTAACATTACATGCTCGGGAAATCGC
130 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATT-TTTCAAACATTCCATGTTCGAGAAATCGC
*
194 ATCATTCGGTCTAAATA-TTTAGT
194 ATCATTTGGTCTAAATAGTTT-GT
* * * * *
217 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATGATGTGCGAATTGTTTCTCTGTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* ** * * *
282 AGTTCTTGGTTGAACTTTCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACCTAGGTTCCTTA
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * ** * * *
347 AAGTATTCTATG-TGATCCATTCCTTCTAGAAATTTTTTGAACATTGCATGTTTGAAAAATCGCA
131 AAGTATTC-AAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAGAAATCGCA
**
411 TCATTTTATCTAAATAGTTTGT
195 TCATTTGGTCTAAATAGTTTGT
* * *
433 CATTTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTTATTTATGTGAG-ATTATTTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * *
497 GATTCTTAGACAAACTTTTGAACTTGTCAAGCTTTTGCTATTTCTTTTATAACTTCA-GTTCCTT
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-AGGTTCCTT
* ** * * *
561 AAAGTATTCAAGATAATCCATTCCCACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGCA
130 AAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAGAAATCGCA
*
626 TCATTTGGTCAAAATAGTTTGT
195 TCATTTGGTCTAAATAGTTTGT
* * * * *
648 CATTTTTTAAAAAACTTTTGGTCATTGAATTAAATACTTATTTATGTGTA-AATTGTTTCTCTCT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCT
* ** * * * *
712 TGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTATTG-TTTCTGTTATAACTTCGGTTCCT
65 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTAGGTTCCT
* * * * * *
776 TAAGGTTTTCAAGATGATCTATTTCTTCGAGCAATTTTGCAAACATTCCAT-TGTCGAGAAATTG
129 TAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGT-TCGAGAAATCG
840 CATCATTTGGTCTAAATAGTTTGT
193 CATCATTTGGTCTAAATAGTTTGT
*
864 CATTTTGTAAACATCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
929 GGTTCTTAGACGAAC-TTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATTATA-TT-GGTTCC
66 GGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTA-TA-ACTTAGGTTCC
* * * * * * *
991 TTAAAGTATTCAAGACGATCCATTCTTTCAAGCAATATTGCAAACATTCTATGCTCGAGAAATCG
128 TTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAGAAATCG
* * *
1056 CATCATTCGGTCTAAATATTTTAT
193 CATCATTTGGTCTAAATAGTTTGT
* * *
1080 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATATACGAGAGAATTGTTTCACTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * ** * * * *
1145 AGTTCTGGGTTGAACTTCCGAAATTGGCAAACTTTTACGCGTTCTTTTATAACTTAGGTTCCTTA
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * ** * ** *
1210 AAGCATTCTATG-CGAAT-CATTCCTTCTA-CAAATTTTTTGAACCTTAAATGTTCG-GAAAATT
131 AAGTATTC-AAGATG-ATCCATTCCTTCGAGC-AATTTTTCAAACATTCCATGTTCGAG-AAATC
*
1271 GCATCATTTGATCTAAATAGTTTGT
192 GCATCATTTGGTCTAAATAGTTTGT
* * * * * *
1296 CATTTTTTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTGACGTGGGATTTGTTTCCCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * ** ** *
1361 GGTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCTGTTCGATG
66 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * *
1426 AAGTATT-ATAAATGAACCACTT-CATCGAGCAA-TTTTCGAACATTCCAT-TCTCTG-GAAATT
131 AAGTATTCA-AGATGATCCA-TTCCTTCGAGCAATTTTTCAAACATTCCATGT-TC-GAGAAATC
* * *
1486 GAATCTTTTGGTTTAAATAGTTTGT
192 GCATCATTTGGTCTAAATAGTTTGT
*
1511 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-GAAATTGTTTCTCTCT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCT
* ** ** ** * * *
1575 TGGTTCTTGGAAGAACTACCGAACCCGGAAAACTTTTACGAGTTATTTTATAA-TATCGATTCCT
65 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TAGGTTCCT
* * * * ** * * *
1639 TAAAGTATTCAAGA-CAGTCCATTTCTACGAGAAATTTTAAAAACTTTCCACGCTCGAGAAAAT-
129 TAAAGTATTCAAGATGA-TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAG-AAATC
**
1702 GCATTTTTTGGTCTAAATAGTTTGT
192 GCATCATTTGGTCTAAATAGTTTGT
* * ** ** * * *
1727 CATTTTGAAAACCAAGTTTTTCTCTTCAAATTAAAAACTTTTTTACGTTAGAATTGTTTCAC-CT
1 CATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-
* * * * * * * *
1791 TTGGTTATTAGATGAAC-TTCTGAGCTAGTCAAGCTTTTACAAGTTCTTTTATAACTTTGGTTCC
64 TTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCC
* * * * * * * * * * * * * *
1855 TTACAGTATTGAAAACGATCCATTCCTTTGATCGATATTCCGAACATTCCATGCTCGGGAAGTAG
128 TTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAGAAATCG
* * *
1920 CATCATTCGATCT-AATAGTTTTT
193 CATCATTTGGTCTAAATAGTTTGT
** ** * *
1943 CATTTTGCGAACAACTTTTTGGTCTTTGAATTAAAAA-TATATTTATATGAGAATTATTTCTCTT
1 CATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTC
* * ** * * * *
2007 TTGATTCTTAGAAAAAC-TTCTGAACTTGTCCAACTTTTACTATTTCTTTTATTATCACTTCGAG
64 TTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTA-TA--ACTTAG-G
2071 -TCCTTAAAGTATTCAAGATGATC
124 TTCCTTAAAGTATTCAAGATGATC
2094 TCATCATTCG
Statistics
Matches: 1506, Mismatches: 317, Indels: 105
0.78 0.16 0.05
Matches are distributed among these distances:
214 10 0.01
215 350 0.23
216 953 0.63
217 164 0.11
218 4 0.00
219 24 0.02
220 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (216 bp):
CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
AAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGTTCGAGAAATCGCAT
CATTTGGTCTAAATAGTTTGT
Found at i:1470 original size:647 final size:644
Alignment explanation
Indices: 1--2058 Score: 1817
Period size: 647 Copynumber: 3.2 Consensus size: 644
* * *
1 CATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTT
1 CATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * * *
66 GGTTCTTAGAGGAACTTCTGTACTTTTCAAGCTTTTACGAGTTCTTTTATAACTT-TCGTT-GCT
66 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCT-GTTCG-A
* * *
129 TAAAGTATTCA-AGATGATCCATTCTTTCGAGC-ATTATTCCTAACATTACA-TGCTCGGGAAAT
129 TAAAGTATT-ATAAATGATCCATTC-TTCGAGCAATT-TTCCAAACATTCCATTG-TC-GGAAAT
* *
191 CGCATCATTCGGTCTAAATA-TTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
189 TGCATCATTTGGTCTAAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * **
255 TAATGATGTGCGAATTGTTTCTCTGTTAGTTCTTGGTTGAACTT-TCGAACTAGTCAAACTTTTA
253 TATTTATGTG-GAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCT-GAACTAGTCAAACTTTTA
* ** * * * *
319 TGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCTATG-TGATCCATTCCTTCTAGAAATTTT
316 CGAGTTCTTTTATAATATAGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCAAGAAATATT
*** * * ** *
383 TTGAACATTGCATGTTTGAAAAATCGCATCATTTTATCTAAATAGTTTGTCATTTTGTAAACAAC
380 GCAAACATTGCATGCTCGAAAAATCGCATCATTCGATCTAAATAGTTTATCATTTTGTAAACAAC
* * * * *
448 TTTTGGTCTTCGAATTAAAAACTTATTTATGTGAGATTATTTCTCTCTTGATTCTTAGACAAACT
445 TTTTGGTCTTCGAATTAAAAACTTATATACGAGAGATTATTTCACTCTTGATTCTGAGACAAACT
** * * * * * * * *
513 TTTGAACTTGTCAAGCTTTTGCTATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATAAT
510 TCCGAAATTGGCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGCATTCAAGAGAAT
** *
578 CCATTCCCACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAG
575 CCATTCCCACGAGCAATATTCCAAACATTAAATGCTCGAGAAATCGCATCATTTGATCAAAATAG
643 TTTGT
640 TTTGT
* * * *
648 CATTTTTTAAAAAACTTTTGGTCATTGAATTAAATACTTATTTATGTGTA-AATTGTTTCTCTCT
1 CATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCT
* * ** *** * * **
712 TGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTATTGTTTCTGTTATAACTTCGGTTCCTT
65 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCTGTTCGAT
* * *
777 AAGGT-TT-TCAAGATGATCTATTTCTTCGAGCAATTTTGCAAACATTCCATTGTCGAGAAATTG
130 AAAGTATTAT-AA-ATGATCCA-TTCTTCGAGCAATTTTCCAAACATTCCATTGTCG-GAAATTG
*
840 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATCTTTTGGTCTTTGAATTAAAAACTTAT
191 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * ** *
905 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAG
256 TTATGTG-GAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTGAACTAGTCAAACTTTTACGAG
* * * *
970 TTCTTTTATTATATTGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCAAGCAATATTGCAAA
320 TTCTTTTATAATATAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATATTGCAAA
* * *
1035 CATT-CTATGCTCGAGAAATCGCATCATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTT
385 CATTGC-ATGCTCGAAAAATCGCATCATTCGATCTAAATAGTTTATCATTTTGTAAACAACTTTT
* * * ***
1099 GGTCTTTGAATTAAAAACTTATATACGAGAGAATTGTTTCACTCTT-AGTTCTGGGTTGAACTTC
449 GGTCTTCGAATTAAAAACTTATATACGAGAG-ATTATTTCACTCTTGA-TTCTGAGACAAACTTC
* * *
1163 CGAAATTGGCAAACTTTTACGCGTTCTTTTATAACTT-AGGTTCCTTAAAGCATTCTATGCGAAT
512 CGAAATTGGCAAACTTTTACGAGTTCTTTTATAACTTCA-GTTCCTTAAAGCATTC-AAGAGAAT
** * * *** * * * *
1227 -CATTCCTTCTA-CAAATTTTTTGAACCTTAAATGTTCG-GAAAATTGCATCATTTGATCTAAAT
575 CCATTCCCACGAGC-AATATTCCAAACATTAAATGCTCGAG-AAATCGCATCATTTGATCAAAAT
1289 AGTTTGT
638 AGTTTGT
* * * * *
1296 CATTTTTTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTGACGTGGGATTTGTTTCCCTCTT
1 CATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
1361 GGTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCTGTTCGATG
66 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCTGTTCGATA
* * * * *
1426 AAGTATTATAAATGAACCACTTCATCGAGCAATTTT-CGAACATTCCATTCTCTGGAAATTGAAT
131 AAGTATTATAAATGATCCA-TTCTTCGAGCAATTTTCCAAACATTCCATTGTC-GGAAATTGCAT
* *
1490 CTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
194 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * ** ** *
1555 TGTGGAAATTGTTTCTCTCTTGGTTCTTGGAAGAACTACCGAACCCGGAAAACTTTTACGAGTTA
259 TGTGG-AATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTGAACTAGTCAAACTTTTACGAGTTC
* * * * * * ** *
1620 TTTTATAATATCGATTCCTTAAAGTATTCAAGAC-AGTCCATTTCTACGAGAAATTTTAAAAACT
323 TTTTATAATATAGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCAAGAAATATTGCAAACA
* * ** * * * * * *
1684 TTCCACGCTCGAGAAAAT-GCATTTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTT
387 TTGCATGCTCGA-AAAATCGCATCATTCGATCTAAATAGTTTATCATTTTGTAAA-CAACTTTTG
* * * * * * * * **
1748 CTCTTCAAATTAAAAACTTTTTTACGTTAGA-ATTGTTTCAC-CTTTGGTTATTAGATGAACTTC
450 GTCTTCGAATTAAAAACTTATATACG--AGAGATTATTTCACTC-TTGATTCTGAGACAAACTTC
* ** * * * * ** * * * *
1811 TGAGCTAGTCAAGCTTTTACAAGTTCTTTTATAACTTTGGTTCCTTACAGTATTGAAAACG-ATC
512 CGAAATTGGCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGCATTCAAGA-GAATC
*** * * * ** * * * * *
1875 CATTCCTTTGATCGATATTCCGAACATTCCATGCTCGGGAAGTAGCATCATTCGATC-TAATAGT
576 CATTCCCACGAGCAATATTCCAAACATTAAATGCTCGAGAAATCGCATCATTTGATCAAAATAGT
*
1939 TTTT
641 TTGT
*** ** * *
1943 CATTTTGCGAACAACTTTTTGGTCTTTGAATTAAAAA-TATATTTATATGAGAATTATTTCTCTT
1 CATTTTTTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTC
* * ** * * *
2007 TTGATTCTTAGAAAAACTTCTGAACTTGTCCAACTTTTACTATTTCTTTTAT
64 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAATTTCTTTTAT
2059 TATCACTTCG
Statistics
Matches: 1137, Mismatches: 234, Indels: 79
0.78 0.16 0.05
Matches are distributed among these distances:
646 9 0.01
647 632 0.56
648 481 0.42
649 11 0.01
650 4 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (644 bp):
CATTTTTTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCTGTTCGATA
AAGTATTATAAATGATCCATTCTTCGAGCAATTTTCCAAACATTCCATTGTCGGAAATTGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATG
TGGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTT
TATAATATAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGAAATATTGCAAACATTGC
ATGCTCGAAAAATCGCATCATTCGATCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTC
GAATTAAAAACTTATATACGAGAGATTATTTCACTCTTGATTCTGAGACAAACTTCCGAAATTGG
CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGCATTCAAGAGAATCCATTCCCACG
AGCAATATTCCAAACATTAAATGCTCGAGAAATCGCATCATTTGATCAAAATAGTTTGT
Found at i:1698 original size:863 final size:861
Alignment explanation
Indices: 1--5698 Score: 3453
Period size: 863 Copynumber: 6.7 Consensus size: 861
* *
1 CATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * *
66 GGTTCTTAGAGGAACTTCTGTACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTCGTTGCTTA
66 GGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
* * *
131 AAGTATTCAAGATGATCCATTCTTTCGAGCATTATTCCTAACATTACATGCTCGGGAAATCGCAT
131 AAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAACATT-CATGCTCGGGAAATCGCAT
196 CATTCGGTCTAAATA-TTTAGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATG
195 CATTCGGTCTAAATATTTTA-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATG
* * * * * * * * * *
260 ATGTGCGAATTGTTTCTCTGTTAGTTCTTGGTTGAACTTTCGAACTAGTCAAACTTTTATGAGTT
259 ACGAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAATAGGCAAACTTTTACGAGTT
* * *
325 CTTTTATAACCTAGGTTCCTTAAAGTATTCTATGTGATCCATTCCTTCTAGAAATTTTTTGAACA
324 CTTTTATAACCTAGGTTCCTTAAAGCATTCTATGCGATCCATTCCTTCTACAAATTTTTTGAACA
** * *
390 TTGCATGTTTGAAAAATCGCATCATTTTATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
389 TTAAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * * * **
455 CTTCGAATTAAAAACTTATTTATGTGAGATTATTTCTCTCTTGATTCTTAGACAAACTTTTGAAC
454 CTTCGAATGAAAAACTTATTGACGTGAGATTATTTCCCTCTTGATTCTTAGACAAACCTCCGAAC
* * * * * *
520 TTGTCAAGCTTTTGCTATTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATAATCCATTCC
519 TTGTCAAACTTTTACAATTTCTTTTAAAACTTCAGTTCCATAAAGTATTCAAAATAATCCATT-C
*
585 CACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAGTTTGTCA
583 CACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGAATCATTTGGTCAAAATAGTTTGTCA
* * *
650 TTTTTTAAAAAACTTTTGGTCATTGAATTAAATACTTATTTATGTGTAAATTGTTTCTCTCTTGG
648 TTTTGTAAAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAATTGTTTCTCTCTTGG
* ** * ** * *
715 TTCTTGGACGAACTTTCGAACTAGGAAAACTTTTATTGTTTCTGTTATAACTTCGGTTCCTTAAG
713 TTCTTGGAAGAACTACCGAACCAGGAAAACTTTTAGAGTTTCTGTTATAACTTCGATTCCTTAAA
* * * * * ** * *
780 GTTTTCAAGATGATCTATTTCTTCGAGCAATTTTGCAAACATTCCATTGTCGAGAAATTGCATCA
778 GTATTCAAGAAGATCCATTTCTACGAGAAATTTTAAAAACATTCCATCGTCGAGAAAATGCATCA
845 TTTGGTCTAAATAGTTTGT
843 TTTGGTCTAAATAGTTTGT
*
864 CATTTTGTAAACATCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
*
929 GGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATTA-TATTGGTTCCTT
66 GGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACT-TTGGTTCCTT
* * *
993 AAAGTATTCAAGACGATCCATTCTTTCAAGCAATATTGCAAACATTCTATGCTCGAGAAATCGCA
130 AAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAACATTC-ATGCTCGGGAAATCGCA
1058 TCATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATAT
194 TCATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-AT
* *
1123 -ACGAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAATTGGCAAACTTTTACGCGT
258 GACGAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAATAGGCAAACTTTTACGAGT
*
1187 TCTTTTATAACTTAGGTTCCTTAAAGCATTCTATGCGAAT-CATTCCTTCTACAAATTTTTTGAA
323 TCTTTTATAACCTAGGTTCCTTAAAGCATTCTATGCG-ATCCATTCCTTCTACAAATTTTTTGAA
* * * *
1251 CCTTAAATGTTCGGAAAATTGCATCATTTGATCTAAATAGTTTGTCATTTTTTAAACAACTTTTG
387 CATTAAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * *
1316 GTCTTTGAATGAAAAACTTATTGACGTGGGATTTGTTTCCCTCTTGGTTCTTGGACGAACCTCCG
452 GTCTTCGAATGAAAAACTTATTGACGTGAGA-TTATTTCCCTCTTGATTCTTAGACAAACCTCCG
* * *
1381 AACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCTGTTCGATGAAGTATT-ATAAATGAA-CC
516 AACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCAGTTCCATAAAGTATTCA-AAAT-AATCC
* * * * * **
1444 ACTT-CATCGAGCAAT-TTTCGAACATTCCATTCTCTG-GAAATTGAATCTTTTGGTTTAAATAG
579 A-TTCCA-CGAGCAATATTCCAAACATTCCATGCTC-GAGAAATCGAATCATTTGGTCAAAATAG
* *
1506 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGGAAATTGTTTCT
641 TTTGTCATTTTGTAAAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAATTGTTTCT
*
1571 CTCTTGGTTCTTGGAAGAACTACCGAACCCGGAAAACTTTTACGAGTTAT-T-TTATAA-TATCG
706 CTCTTGGTTCTTGGAAGAACTACCGAACCAGGAAAACTTTTA-GAGTT-TCTGTTATAACT-TCG
*
1633 ATTCCTTAAAGTATTCAAGACAG-TCCATTTCTACGAGAAATTTTAAAAACTTTCCA-CGCTCGA
768 ATTCCTTAAAGTATTCAAGA-AGATCCATTTCTACGAGAAATTTTAAAAACATTCCATCG-TCGA
**
1696 GAAAATGCATTTTTTGGTCTAAATAGTTTGT
831 GAAAATGCATCATTTGGTCTAAATAGTTTGT
* * ** ** * * *
1727 CATTTTGAAAACCAAGTTTTTCTCTTCAAATTAAAAACTTTTTTACGTTAGAATTGTTTCAC-CT
1 CATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-
* * * ** *
1791 TTGGTTATTAGATGAACTTCTGAGCTAGTCAAGCTTTTACAAGTTCTTTTATAACTTTGGTTCCT
64 TTGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCT
* * * * * * * *
1856 TACAGTATTGAAAACGATCCATTCCTTT-GATCGATATTCCGAACATTCCATGCTCGGGAAGTAG
129 TAAAGTATTCAAGACGATCCATT-CTTTCGAGCAATATTCCAAACATT-CATGCTCGGGAAATCG
* **
1920 CATCATTCGATCT-AATAGTTTT-TCATTTTGCGAACAACTTTTTGGTCTTTGAATTAAAAA-TA
192 CATCATTCGGTCTAAATA-TTTTATCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACT-
* * * * * * ** *** * * * * *
1982 TATTTA-TATGAGAATTATTTCTCT-TTTGATTCTTAGAAAAACTTCTGAACTTGTCCAACTTTT
254 TAATGACGA-GAGAATTGTTTCACTCTTAG-TTCTGGGTTGAACTTCCGAAATAGGCAAACTTTT
* * * * * * * *
2045 ACTATTTCTTTTATTATCACTTCGAG-TCCTTAAAGTATTC-AAGATGATCTCA-TCATTCGGT-
317 ACGAGTTCTTTTA-TA--ACCTAG-GTTCCTTAAAGCATTCTATG-CGATC-CATTCCTTC--TA
* ** * * ** * * * * *
2106 CAAGCTAGTTTG-CCATT--TTG-TAAAAAAACTTTTG-GTCA-TTGAAT-TTAATACTTAT-TT
374 CAA-ATTTTTTGAACATTAAATGTTCGAAAAA---TCGCATCATTTG-ATCTAAATAGTT-TGTC
* *** ** * **
2163 A-TGTGTAAATTGTTTCTCTCTTGGTTCTT-G---GACGAACTT-TCGAAC-T-AGGAAAACTTT
433 ATTTTGTAAA---CAACT-T-TTGG-TCTTCGAATGAAAAACTTATTG-ACGTGA-GATTA-TTT
** * * * * * ** * * * ** ** ** *
2220 TACT-AT--TTCTGT-TA-TAACTTCGGTTCCT-T-AAAGTATT-CAA--GATGAT-CCATTTC-
489 CCCTCTTGATTCT-TAGACAAACCTCCGAACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCA
** ** * * * * * * * * * *
2273 -TTTGAGCAA-TTTTGC-GAATATTCCA-TGCTCGAG-AA-ATTGC-ATCA---CTTGGTCTA-A
553 GTTCCATAAAGTATT-CAAAATAATCCATTCCACGAGCAATATTCCAAACATTCCATGCTCGAGA
* * ** * * * ** *
2327 ATTGTGTGTCATTTTG-CAAACA-ACTTTTTGGTCTTTG-AATTAAAA--------A-------T
617 AAT-CGAATCATTTGGTCAAA-ATAGTTTGTCAT-TTTGTAA--AAAACTTTTGGTCATTGAATT
* * * * * * ** ** **
2374 ----A--TATTTATGT-GAGATTTATTTCTCTTTTGATTCTTAGACA-AACTTCTAAACTTGTCA
677 AAAAACTTATTTATGTGGA-AATTGTTTCTCTCTTGGTTCTTGGA-AGAACTACCGAACCAGGAA
* * * * * * * *
2431 AGCTTTCACTA-TTTCTTTTATAACTTC-AGTTCCTTAAAGTATGCAAGATGATCCATTCCTTCG
740 AACTTTTA-GAGTTTCTGTTATAACTTCGA-TTCCTTAAAGTATTCAAGAAGATCCATTTCTACG
* * *** * * * *
2494 AGCAATATTCTGAACATTCCAT-GCTTGAG-AAATCCCATCATTCGGTCAAAATAGTTTGT
803 AGAAATTTTAAAAACATTCCATCG-TCGAGAAAAT-GCATCATTTGGTCTAAATAGTTTGT
*
2553 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-GAAATTGTTTCTCTCT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCT
* * * * ** * * * * *
2617 TGGTTCTTGGATGAACTACCGAACTCGTAAAACTTTTACGAGTTATTTTATAACATTGATTCCTT
65 TGGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTT
* * * * * *
2682 AAAGTATTCAAGACCATCCATT-TCTACGAGCAATTTTCAAAACATTCCATGTTCGAGAAAAT-G
130 AAAGTATTCAAGACGATCCATTCT-TTCGAGCAATATTCCAAACATT-CATGCTCG-GGAAATCG
* ** * * * * * ** **
2745 CTTTTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTTCTCTTCAAATTAAAAACTTA
192 CATCATTCGGTCTAAATATTTTATCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * ** * * * * *
2810 TTTACGTGAGAATAGTTTCAC-CTTTGGTTCTTAGATGAACTTCTGAACTAGTCAAGCTTTTACG
256 ATGACGAGAGAATTGTTTCACTC-TTAGTTCTGGGTTGAACTTCCGAAATAGGCAAACTTTTACG
* * * * * * * * *
2874 AGTTCTTTTATAACTTTGGTTCCTTACAGTATTC-AAGACGATCCATTCCTTCGA-ACAGTATTC
320 AGTTCTTTTATAACCTAGGTTCCTTAAAGCATTCTATG-CGATCCATTCCTTCTACA-AATTTTT
** ** * ** * * * **
2937 CAAACATTCCATGCTCGGGAAGTAGCATCATTTGGTCTAAATAGTTTGTCATTTTGCGAACAACT
383 TGAACATTAAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAAC-
* * * * * * *
3002 TTTTGGTCTTTGAATTAAAAA-TATATTTATGTGAGAATTATTTCTCTTTTGATTCTTCGACAAA
447 TTTTGGTCTTCGAATGAAAAACT-TATTGACGTGAG-ATTATTTCCCTCTTGATTCTTAGACAAA
* * * * * * *
3066 CTTCTGAACTTGT-AAAGCTTTTACTATTTCTTTTATTATCACTTCGGTTCCTTAAAGTACTCAA
510 CCTCCGAACTTGTCAAA-CTTTTACAATTTCTTTTA--A-AACTTCAGTTCCATAAAGTATTCAA
* * ** * * * * ** *
3130 GATGATCCATTGCTTCAAGCAATATTTCGATCATTCCATGCTCGAGAAATCTCATCATTCGGTCA
571 AATAATCCATT-CCACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGAATCATTTGGTCA
* * * *
3195 AAATAGTTTGCCATTTTGTAGAAAAACTTTTGGTCGTTGAATTAAATACTTATTTATGTGTAAAT
635 AAATAGTTTGTCATTTTGTA-AAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAAT
* * ** * * * *
3260 TGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGAAAAACTTTTACTA-TTTCTGATATAA
699 TGTTTCTCTCTTGGTTCTTGGAAGAACTACCGAACCAGGAAAACTTTTA-GAGTTTCTGTTATAA
* * * * * * * * **
3324 CTTCGGTTCCTAAAAGTTTTCAAGATGATCTATTTCTTCAAGTAATTTTACGAACATTCCAT-GC
763 CTTCGATTCCTTAAAGTATTCAAGAAGATCCATTTCTACGAGAAATTTTAAAAACATTCCATCG-
* * *
3388 TCGAGAAATTGCATTATCTGGTCTAAATA--TTGT
827 TCGAGAAAATGCATCATTTGGTCTAAATAGTTTGT
* * * *
3421 CATTTTGTAACCAACTTTTGGCCTTTGAATTAAAAACTTAATGACGTG-GATATTGTTTCTCTCT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCT
* * * ** * * **
3485 TAGTTCCTAGATGAACTT-TCGAACTAGTCAAACTTTTATGAGTTCTTTTATAACTTACGTTCCT
65 TGGTTCTTAGACGAACTTCT-GAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCT
* * * * * * *** * * **
3549 TAAAGTATTC-TG-TGTTATCCATTCCTTCTAGAAATTTTTTGATCATTGCATGTTCGAAAAATC
129 TAAAGTATTCAAGACG--ATCCATTCTTTCGAGCAATATTCCAAACATT-CATGCTCGGGAAATC
*** * * * *
3612 GCATCATTTTATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCATA
191 GCATCATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * ** * ** *** * * * *
3677 TTTATGTGAG-ATCATTTCTCTCTT-GATTCTTAGACAAACTT-CTAAACTTGTCAAGCTTTTAC
256 ATGACGAGAGAATTGTTTCACTCTTAG-TTCTGGGTTGAACTTCCGAAA-TAGGCAAACTTTTAC
* * * * * * *
3739 TATTTCTTTTATAACTTCA-ATTCCTTAAAGTATTC-A--AGA-CGA-----TC--C--A-----
319 GAGTTCTTTTATAACCT-AGGTTCCTTAAAGCATTCTATGCGATCCATTCCTTCTACAAATTTTT
** * * * * *
3785 --AACATTCCATGCTCGAGAAATCGCATCATTCGATCTAAATATTTTGTCATTTTGTAAACAAAT
383 TGAACATTAAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * **
3848 TTTGGTCTTTC-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-AGTTCTTGGATGAA
448 TTTGGTC-TTCGAATGAAAAACTTATTGACGTGAG-ATTATTTCCCTCTTGA-TTCTTAGACAAA
* * ** ** * * * * ***
3911 CTTCCAAACTTGTCAAACTTTTATGAGCTCTTTTATAACTT-AGGTTCCTTAAAGCATTCTATGC
510 CCTCCGAACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCA-GTTCCATAAAGTATTCAAAAT
* * * * * * ** * * * *
3975 GATCCATTCCTTCTA-CAAATTTTTCGAACATTTAATGGTCG-GAAAATCGCATCTTTTGATCTA
574 AATCCATTCC-ACGAGC-AATATTCCAAACATTCCATGCTCGAG-AAATCGAATCATTTGGTC-A
* * * * * ** * * *
4038 AAA-ACTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAACATATCGACGTGGGATTT
635 AAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAATT
* * ** ** * * *
4102 GTCTCTCTCTTGGTTCTTGGACGAACCT-CCGAACTTGTCAAACTTTTACAAG-TTCTTTTAAAA
700 GTTTCTCTCTTGGTTCTTGGAAGAA-CTACCGAACCAGGAAAACTTTTA-GAGTTTCTGTTATAA
* * * * ** *
4165 CTTTTG-TTCCTTGAAGTATT-ATA-AATGATCCACTTC-ATCGAGCAATTTT-CGAACATTTCA
763 C-TTCGATTCCTTAAAGTATTCA-AGAA-GATCCATTTCTA-CGAGAAATTTTAAAAACATTCCA
* * * *
4225 TTC-TCCGA-AAATTGAATCTTTTGGTTTAAATAGTTTGT
824 -TCGT-CGAGAAAATGCATCATTTGGTCTAAATAGTTTGT
*
4263 CATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * * * * *
4327 GGTTCTTGGACGAACTACCGAACTTGTAAAACTTTTACGAGTTATTTTACAACTTTGGTTCCATA
66 GGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
* * * ** *
4392 AAGTATTCAAGATC-ATCCATT-TCTACGACCAATTTTCCAAACATTCCATGCTCTAGAAATTGC
131 AAGTATTCAAGA-CGATCCATTCT-TTCGAGCAATATTCCAAACATT-CATGCTCGGGAAATCGC
* * * * * * ** * *
4455 ATCTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGTTTTGGTCTTCAAATTAAAAACATAT
193 ATCATTCGGTCTAAATATTTTATCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAACTTAA
* * * * * ** * * * * * * **
4520 TTACGTGAGAATTTTTTCTC-CTTTGTTCTTAGATGAACTTCTGAACTAGTCAAGCTTTTATGTC
257 TGACGAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAATAGGCAAACTTTTACGAG
* * * * * * **
4584 TTCTTTTATAACTTTGGTTCCTTATAA-TATTC-AAGACGATCCATTCCTTCGATC-AATATTCC
322 TTCTTTTATAACCTAGGTTCCTTA-AAGCATTCTATG-CGATCCATTCCTTCTA-CAAATTTTTT
** * ** * *
4646 GAACATTCCATGCTCGGGAAATAGCATCATTTTG-TCTAAATAGTTTGTCATTTTGCAAACAACT
384 GAACATTAAATGTTCGAAAAATCGCATCA-TTTGATCTAAATAGTTTGTCATTTTGTAAACAAC-
* * * * * *
4710 TTTTGGTCTTTC-AATTAAAAA-TATATTTATGTGAGAATTATTTCTCTTTTGATTCTTAGGCAA
447 TTTTGGTC-TTCGAATGAAAAACT-TATTGACGTGAG-ATTATTTCCCTCTTGATTCTTAGACAA
* * * * ** * *
4773 ACTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACTTTGGTTCCTTAAAGTATTCAG
509 ACCTCCGAACTTGTCAAACTTTTACAATTTC-TTT-TAA-AACTTCAGTTCCATAAAGTATTCAA
* * * * * * * * *
4838 GATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGGAAATCGTACCGTTCGGTCA
571 AATAATCCATTCC-ACGAGCAATATTCCAAACATTCCATGCTCGAGAAATCGAATCATTTGGTCA
* * * * * * * *
4903 AAATAGCTTGTCATTTTGTGAACAACTTTTTGTTAATGAATTAAATACTTATTTATGTGTAAATT
635 AAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAATT
* * ** * * *
4968 GTTTCTCCCTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTA-TTTCTGATATAAC
700 GTTTCTCTCTTGGTTCTTGGAAGAACTACCGAACCAGGAAAACTTTTA-GAGTTTCTGTTATAAC
* * * * * * ** ***
5032 TTTGGTTCCTTAAAGTTTTCAAGATGATCTATTTCTTCGACCAATTTTGCGAACATTCCAT-GCT
764 TTCGATTCCTTAAAGTATTCAAGAAGATCCATTTCTACGAGAAATTTTAAAAACATTCCATCG-T
*
5096 CGAGAAATTGCATCATTTGGTCTAAATAGTTTGT
828 CGAGAAAATGCATCATTTGGTCTAAATAGTTTGT
* * * *
5130 CATTTTGTAAACATCTTTTGTTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTTTCTCTT
1 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
*
5195 GGTTCTTAGACGAACTTCT-ATACTTTTCAAGCTTTTACGAGTTCTTTTACAACTTTGGTTCCTT
66 GGTTCTTAGACGAACTTCTGA-ACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTT
* * *
5259 AAAGTATTCAAGACGATCCATTCTTTCGAGCTATATTCCAAACATTCCATGCTCGAGAAATTGCA
130 AAAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAACATT-CATGCTCGGGAAATCGCA
* * * * *
5324 TCATTCGGTCTAAATATTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAAAAACTTATTT
194 TCATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATG
* * * * * * *
5389 ACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCC-AAACTTGTCAAACTTTTACGAGT
259 ACGAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAA-TAGGCAAACTTTTACGAGT
* * *
5453 TCTTTTATAA-TTGAGGTTCCTTAAAGCATTCTATGCGATCCTTTCCTTCTACAAATTTTTCGAA
323 TCTTTTATAACCT-AGGTTCCTTAAAGCATTCTATGCGATCCATTCCTTCTACAAATTTTTTGAA
* * * * * * *
5517 CATTCAATGGTCGGAAAATCGCATCTTTTGATCTAAATACTTTGTCATTTTGTAAAGAATTTTTG
387 CATTAAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * * * * *
5582 GTCTTTGAATTAAAAACTTATTGACGTGGGAATTGTTTCTCTCTTGGTTTTTGGACGAACCTCCG
452 GTCTTCGAATGAAAAACTTATTGACGTGAG-ATTATTTCCCTCTTGATTCTTAGACAAACCTCCG
* * * * * *
5647 AACTTGTCAAACTTTTACAAGTTCTTTCAAAACCTCGGTTCCTTGAAGTATT
516 AACTTGTCAAACTTTTACAATTTCTTTTAAAACTTCAGTTCCATAAAGTATT
5699 ATAAATGAAC
Statistics
Matches: 3796, Mismatches: 779, Indels: 519
0.75 0.15 0.10
Matches are distributed among these distances:
820 4 0.00
821 9 0.00
822 12 0.00
823 39 0.01
824 22 0.01
825 174 0.05
826 231 0.06
827 10 0.00
828 6 0.00
829 9 0.00
830 4 0.00
831 3 0.00
832 3 0.00
834 2 0.00
838 5 0.00
840 37 0.01
841 293 0.08
842 194 0.05
843 21 0.01
844 3 0.00
845 94 0.02
846 82 0.02
847 3 0.00
849 24 0.01
850 18 0.00
851 8 0.00
852 2 0.00
853 9 0.00
854 7 0.00
855 1 0.00
856 4 0.00
857 4 0.00
859 3 0.00
860 6 0.00
861 1 0.00
862 67 0.02
863 768 0.20
864 353 0.09
865 42 0.01
866 295 0.08
867 264 0.07
868 509 0.13
869 10 0.00
870 133 0.04
871 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (861 bp):
CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
GGTTCTTAGACGAACTTCTGAACTTTTCAAGCTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
AAGTATTCAAGACGATCCATTCTTTCGAGCAATATTCCAAACATTCATGCTCGGGAAATCGCATC
ATTCGGTCTAAATATTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATGAC
GAGAGAATTGTTTCACTCTTAGTTCTGGGTTGAACTTCCGAAATAGGCAAACTTTTACGAGTTCT
TTTATAACCTAGGTTCCTTAAAGCATTCTATGCGATCCATTCCTTCTACAAATTTTTTGAACATT
AAATGTTCGAAAAATCGCATCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
TCGAATGAAAAACTTATTGACGTGAGATTATTTCCCTCTTGATTCTTAGACAAACCTCCGAACTT
GTCAAACTTTTACAATTTCTTTTAAAACTTCAGTTCCATAAAGTATTCAAAATAATCCATTCCAC
GAGCAATATTCCAAACATTCCATGCTCGAGAAATCGAATCATTTGGTCAAAATAGTTTGTCATTT
TGTAAAAAACTTTTGGTCATTGAATTAAAAACTTATTTATGTGGAAATTGTTTCTCTCTTGGTTC
TTGGAAGAACTACCGAACCAGGAAAACTTTTAGAGTTTCTGTTATAACTTCGATTCCTTAAAGTA
TTCAAGAAGATCCATTTCTACGAGAAATTTTAAAAACATTCCATCGTCGAGAAAATGCATCATTT
GGTCTAAATAGTTTGT
Found at i:2499 original size:217 final size:214
Alignment explanation
Indices: 2111--3784 Score: 1548
Period size: 217 Copynumber: 7.7 Consensus size: 214
2101 TCGGTCAAGC
* * * * * *
2111 TAGTTTGCCATTTTGTAAAAAAACTTTTGGTCATTGAATTTAATACTTATTTATGTGTA-AATTG
1 TAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAA-TTAAAAATTATTTATGTG-AGAATTA
* * ** * *
2175 TTTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTAGGAAAACTTTTACTATTTCTGTTATAACT
63 TTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACTAGTTCTTTTATAACT
* * * *
2239 TCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAATTTTGCGAATATTCCATGCTCG
127 TTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCG
*
2304 AGAAATTGCATCACTTGGTCTAAA
191 AGAAATTGCATCATTTGGTCTAAA
* * * *
2328 TTGTGTGTCATTTTGCAAACAACTTTTTGGTCTTTGAATTAAAAATATATTTATGTGAGATTTAT
1 TAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAAT-TATTTATGTGAGAATTAT
* * * * * * * *
2393 TTCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTCAAGCTTTCACTATTTCTTTTATAACTTC
64 TTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTT
* * * *
2458 AGTTCCTTAAAGTATGCAAGATGATCCATTCCTTCGAGCAATATTCTGAACATTCCATGCTTGAG
129 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAG
** * *
2523 AAATCCCATCATTCGGTCAAAA
193 AAATTGCATCATTTGGTCTAAA
*
2545 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-GAAATTGT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTATGTGAG-AATTAT
* * * * * * * * *
2609 TTCTCTCTTGGTTCTTGGATGAACTACCGAACTCGTAAAACTTTTACGAGTTATTTTATAACATT
64 TTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTT
* ** * * * *
2674 GATTCCTTAAAGTATTCAAGACCATCCATTTCTACGAGCAATTTTCAAAACATTCCATGTTCGAG
129 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTC-GAACATTCCATGCTCGAG
* * **
2739 AAAATGCTTTTTTTGGTCTAAA
193 AAATTGCATCATTTGGTCTAAA
* * ** ** *
2761 TAGTTTGTCATTTTGAAAACCAAGTTTTTCTCTTCAAATTAAAAACTTATTTACGTGAGAA-TAG
1 TAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAA-TTATTTATGTGAGAATTA-
* * * * *
2825 TTTCAC-CTTTGGTTCTTAGATGAACTTCTGAACTAGTCAAGCTTTTACGAGTTCTTTTATAACT
63 TTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT
* * * * * *
2889 TTGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAACAGTATTCCAAACATTCCATGCTCG
127 TTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TTTCGAACATTCCATGCTCG
* * *
2954 GGAAGTAGCATCATTTGGTCTAAA
191 AGAAATTGCATCATTTGGTCTAAA
**
2978 TAGTTTGTCATTTTGCGAACAACTTTTTGGTCTTTGAATTAAAAATATATTTATGTGAGAATTAT
1 TAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAAT-TATTTATGTGAGAATTAT
* * * * *
3043 TTCTCTTTTGATTCTTCGACAAACTTCTGAACTTGT-AAAGCTTTTACTATTTCTTTTATTATCA
64 TTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAA-CTTTTACTAGTTCTTTTA-TA--A
* * * * *
3107 CTTCGGTTCCTTAAAGTACTCAAGATGATCCATTGCTTCAAGCAATATTTCGATCATTCCATGCT
125 CTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TTTCGAACATTCCATGCT
* *
3172 CGAGAAATCT-CATCATTCGGTCAAAA
189 CGAGAAAT-TGCATCATTTGGTCTAAA
* * * * *
3198 TAGTTTGCCATTTTGTAGAAAAACTTTTGGTCGTTGAATTAAATACTTATTTATGTGTA-AATTG
1 TAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAA-AATTATTTATGTG-AGAATTA
* * * ** * **
3262 TATCTCTCTTGGTTCTTGGACGAACTT-TCGAACTAGAAAAACTTTTACTATTTCTGATATAACT
63 TTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACTAGTTCTTTTATAACT
* * * * * * *
3326 TCGGTTCCTAAAAGTTTTCAAGATGATCTATTTCTTCAAGTAATTTTACGAACATTCCATGCTCG
127 TTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCG
* *
3391 AGAAATTGCATTATCTGGTCTAAA
191 AGAAATTGCATCATTTGGTCTAAA
* * * * * *
3415 TA--TTGTCATTTTGTAACCAACTTTTGGCCTTTGAATTAAAAACTTAATGACGTG-GATATTGT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTATGTGAGA-ATTAT
* * * *
3477 TTCTCTCTTAGTTCCTAGATGAACTT-TCGAACTAGTCAAACTTTTA-TGAGTTCTTTTATAACT
64 TTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAACTTTTACT-AGTTCTTTTATAACT
** * * * * * * *
3540 TACGTTCCTTAAAGTATTC-TG-TGTTATCCATTCCTTCTAGAAATTTTTTGATCATTGCATGTT
127 TTGGTTCCTTAAAGTATTCAAGATG--ATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCT
* * **
3603 CGAAAAATCGCATCATTTTATCTAAA
189 CGAGAAATTGCATCATTTGGTCTAAA
*
3629 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAATCATATTTATGTGAG-ATCAT
1 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAT--TATTTATGTGAGAATTAT
* * * * * *
3692 TTCTCTCTTGATTCTTAGACAAACTTCTAAACTTGTCAAGCTTTTACTATTTCTTTTATAACTTC
64 TTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTT
** *
3757 AATTCCTTAAAGTATTCAAGACGATCCA
129 GGTTCCTTAAAGTATTCAAGATGATCCA
3785 AACATTCCAT
Statistics
Matches: 1185, Mismatches: 228, Indels: 90
0.79 0.15 0.06
Matches are distributed among these distances:
212 2 0.00
213 4 0.00
214 148 0.12
215 95 0.08
216 237 0.20
217 511 0.43
218 9 0.01
219 3 0.00
220 165 0.14
221 11 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (214 bp):
TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAATTATTTATGTGAGAATTATTT
CTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTTGG
TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGAGAAA
TTGCATCATTTGGTCTAAA
Found at i:4176 original size:216 final size:216
Alignment explanation
Indices: 3785--5698 Score: 2009
Period size: 216 Copynumber: 8.9 Consensus size: 216
3775 AGACGATCCA
* * * * *
3785 AACATTCCATGCTC-GAGAAATCGCATCATTCGATCTAAATATTTTGTCATTTTGTAAACAAATT
1 AACATTCCATGCTCGGA-AAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
3849 TTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
3914 CCAAACTTGTCAAACTTTTATGAGCTCTTTTATAACTTAGGTTCCTTAAAGCATTCTATG-CGAT
130 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC-AAGACGAT
* *
3978 CCATTCCTTCTA-CAAATTTTTCG
194 CCATTCCTTCGAGC-AATTTTCCG
** * * * *
4001 AACATTTAATGGTCGGAAAATCGCATCTTTTGATCTAAAAACTTTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGAAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * ** * * * *
4066 TGGTCTTTGAGTTAAAAACATATCGACGTGGGATTTGTCTCTCTCTTGGTTCTTGGACGAACCTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
4131 CGAACTTGTCAAACTTTTACAAGTTCTTTTAAAACTTTTGTTCCTTGAAGTATT-ATAAATGATC
131 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA-AGACGATC
*
4195 CACTT-CATCGAGCAATTTT-CG
195 CA-TTCCTTCGAGCAATTTTCCG
* * * * * *
4216 AACATTTCATTCTCCGAAAATTGAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAAC-TT
1 AACATTCCATGCTCGGAAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* *
4280 TGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTAC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
4345 CGAACTTGTAAAACTTTTACGAGTTATTTTACAACTTTGGTTCCATAAAGTATTCAAGATC-ATC
131 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-CGATC
* * * *
4409 CATTTCTACGACCAATTTTCCA
195 CATTCCTTCGAGCAATTTTCCG
* * * *
4431 AACATTCCATGCTC-TAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTGAAAACCAAGT
1 AACATTCCATGCTCGGA-AAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACT
** * * * * *
4495 TTTGGTCTTCAAATTAAAAACATATTTACGTGAGAATTTTTTCTC-CTTTGTTCTTAGATGAACT
64 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * **
4559 TCTGAACTAGTCAAGCTTTTATGTCTTCTTTTATAACTTTGGTTCCTTATAA-TATTCAAGACGA
129 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA-AAGTATTCAAGACGA
* *
4623 TCCATTCCTTCGATCAATATTCCG
193 TCCATTCCTTCGAGCAATTTTCCG
* * *
4647 AACATTCCATGCTCGGGAAATAGCATCATTTT-GTCTAAATAGTTTGTCATTTTGCAAACAACTT
1 AACATTCCATGCTCGGAAAATCGCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC-T
* * * * * *
4711 TTTGGTCTTTCAATTAAAAA-TATATTTATGTGAGAATTATTTCTCTTTTGATTCTTAGG-CAAA
64 TTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAA
* * * * *
4774 CTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACTTTGGTTCCTTAAAGTATTCAGG
127 CTTCCGAACTTGTCAAACTTTTACGAGTTC-TTT-T-ATAACTTTGGTTCCTTAAAGTATTCAAG
* *
4839 ATGATCCATTCCTTCGAGCAATTTTCCA
189 ACGATCCATTCCTTCGAGCAATTTTCCG
* * * * * * * *
4867 AACATTCCATGCTCGGGAAATCGTACCGTTCGGTCAAAATAGCTTGTCATTTTGTGAACAACTTT
1 AACATTCCATGCTCGGAAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
4932 TTGT-TAATGAATTAAATACTTATTTATGTGTA-AATTGTTTCTCCCTTGGTTCTTGGACGAACT
66 TGGTCT-TTGAATTAAAAACTTATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * ** * * ** * *
4995 TTCGAACTAGGAAAACTTTTACTATTTCTGATATAACTTTGGTTCCTTAAAGTTTTCAAGATGAT
129 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * * *
5060 CTATTTCTTCGACCAATTTTGCG
194 CCATTCCTTCGAGCAATTTTCCG
* * *
5083 AACATTCCATGCTC-GAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATCTT
1 AACATTCCATGCTCGGA-AAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
5147 TTGTTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTTTCTCTTGGTTCTTAGACGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
5212 -CTATACTTTTCAAGCTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACGAT
130 CCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * * *
5276 CCATTCTTTCGAGCTATATTCCA
194 CCATTCCTTCGAGCAATTTTCCG
* * * * *
5299 AACATTCCATGCTC-GAGAAATTGCATCATTCGGTCTAAATATTTTGTCATTTTGTAAACAAATT
1 AACATTCCATGCTCGGA-AAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
5363 TTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTT
65 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
5428 CCAAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTGAGGTTCCTTAAAGCATTCTATG-CGA
130 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTC-AAGACGA
* * *
5491 TCCTTTCCTTCTA-CAAATTTTTCG
193 TCCATTCCTTCGAGC-AATTTTCCG
* * * * * *
5515 AACATTCAATGGTCGGAAAATCGCATCTTTTGATCTAAATACTTTGTCATTTTGTAAAGAATTTT
1 AACATTCCATGCTCGGAAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * *
5580 TGGTCTTTGAATTAAAAACTTATTGACGTGGGAATTGTTTCTCTCTTGGTTTTTGGACGAACCTC
66 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * * *
5645 CGAACTTGTCAAACTTTTACAAGTTCTTTCAAAACCTCGGTTCCTTGAAGTATT
131 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
5699 ATAAATGAAC
Statistics
Matches: 1416, Mismatches: 243, Indels: 78
0.82 0.14 0.04
Matches are distributed among these distances:
213 2 0.00
214 124 0.09
215 117 0.08
216 896 0.63
217 94 0.07
218 8 0.01
219 75 0.05
220 100 0.07
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
AACATTCCATGCTCGGAAAATCGCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
ATTCCTTCGAGCAATTTTCCG
Found at i:5093 original size:652 final size:645
Alignment explanation
Indices: 2114--5669 Score: 2720
Period size: 652 Copynumber: 5.5 Consensus size: 645
2104 GTCAAGCTAG
* * * * * *
2114 TTTGCCATTTTGTAAAAAAAC-TTTTGGTCATTGAATTTAATACT-TATTTATGTGTA-AATTGT
1 TTTGTCATTTTGT-AAACAACTTTTTGGTCTTTGAA-TTAAAAATATATTTACGTG-AGAATTGT
* * * * ** * * *
2176 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTTTTACTATTTC-TGT-T-ATAAC
63 TTCTCT-TTTGTTCTTGG-CAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAAC
* * * *
2238 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTTCTTTGAGCAATTTTGCGAATATTCCATGCTC
126 TTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTC
* * ** * *
2303 -GAGAAATTGCATCACTTGGTCTAAATTG-TGTGTCATTTTGCAAACAACTTTTTGGTCTTTGAA
190 GGA-AAATCGAATCTTTTGGTCTAAATAGCT-TGTCATTTTGTAAACAACTTTTT-GTCTTTGAA
* * * * * * ** *
2366 TTAAAAA-TATATTTATGTGAGATTTATTTCTCTTTTGATTCTTAGACAAACTTCTAAACTTGTC
252 TTAAAAACT-TATTTATGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTA
* * * * * ** * ** * * * * *
2430 AAGCTTTCACTATTTCTTTTATAACTTCAGTTCCTTAAAGTATGCAAGATGATCCATTCCTTCGA
315 AAACTTTTACGAGTTATGATACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGA
* * ** * ** * *
2495 GCAATATTCTGAACATTCCATGCTTGAGAAATCCCATCATTCGGTCAAAATAGTTTGTCATTTTG
380 CCAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
2560 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-GAAATTGTTTCTCTCTTGGTTCT
445 TAAACAAATTTTGGTC-TTCAATTAAAAACTTATTTACGTGAG-AATTTTTTCTCTCTTAGTTCT
* * * * * * * * * * *
2624 TGGATGAACTACCGAACTCGTAAAACTTTTACGAGTTATTTTATAACATTGATTCCTTAAAGTAT
508 TAGATGAACT-TCTAACTTGTCAAGCTTTTATGACTTCTTTTATAACTTTGGTTCCTTAAAGTAT
* * * * ** * * **
2689 TCAAGACCATCCATTTCTACGAGCAATTTTCAAAACATTCCATGTTCGAGAAA-ATGC-TTTTTT
572 TCAAGACGATCCATTCCTTCGA-CAATATTCCGAACATTCCATGCTCGGGAAATA-GCATCATTT
*
2752 TGGTCTAAATAG
635 T-GTCTAAATAC
* * * ** *
2764 TTTGTCATTTTGAAAACCAAGTTTTT-CTCTTCAAATTAAAAACT-TATTTACGTGAGAATAGTT
1 TTTGTCATTTTGTAAA-CAACTTTTTGGTCTTTGAATTAAAAA-TATATTTACGTGAGAATTGTT
* * * * * * *
2827 TCACCTTTGGTTCTTAG-ATGAACTTCTGAACTAGTCAAGCTTTTACGAGTTC-TTT-T-ATAAC
64 TC-TCTTTTGTTCTTGGCA--AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAAC
* * * * * *
2888 TTTGGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAACAGTATTCCAAACATTCCATGCTC
126 TTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAAT-TTTCGAACATTCCATGCTC
* * * * * * **
2953 GGGAAGTAGCATCATTTGGTCTAAATAGTTTGTCATTTTGCGAACAACTTTTTGGTCTTTGAATT
190 GGAAAATCGAATCTTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTT-GTCTTTGAATT
* * * * * *
3018 AAAAA-TATATTTATGTGAGAATTATTTCTCTTTTGATTCTTCGACAAACTTCTGAACTTGTAAA
254 AAAAACT-TATTTATGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAA
* * * * * * * * * * *
3082 GCTTTTACTATTTCTTTTATTATC-ACTTCGGTTCCTTAAAGTACTCAAGATGATCCATTGCTTC
317 ACTTTTACGA-GT-TATGA-TA-CAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTAC
* * * * * * *
3146 AAGCAATATTT-CGATCATTCCATGCTCGAGAAATCT-CATCATTCGGTCAAAATAGTTTGCCAT
378 GACCAAT-TTTCCAAACATTCCATGCTCGAGAAAT-TGCATCATTTGGTCTAAATAGTTTGTCAT
* * * * *
3209 TTTGTAGAA-AAACTTTTGGTCGTTGAATTAAATACTTATTTATGTGTA-AATTGTATCTCTCTT
441 TTTGTA-AACAAA-TTTTGGTC-TTCAATTAAAAACTTATTTACGTG-AGAATTTTTTCTCTCTT
* * * * * ** * * ** * *
3272 GGTTCTTGGACGAACTTTCGAACTAGAAAAACTTTTACT-ATTTCTGATATAACTTCGGTTCCTA
502 AGTTCTTAGATGAAC-TTCTAACTTGTCAAGCTTTTA-TGACTTCTTTTATAACTTTGGTTCCTT
* * * * * * * * * *
3336 AAAGTTTTCAAGATGATCTATTTCTTCAAGTAATTTTACGAACATTCCATGCTCGAGAAATTGCA
565 AAAGTATTCAAGACGATCCATTCCTTCGA-CAATATTCCGAACATTCCATGCTCGGGAAATAGCA
* * *
3401 TTATCTGGTCTAAATA-
629 TCATTTTGTCTAAATAC
* * * *
3417 -TTGTCATTTTGTAACCAAC-TTTTGGCCTTTGAATTAAAAACT-TAATGACGTG-GATATTGTT
1 TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAA-TATATTTACGTGAGA-ATTGTT
* * * * * **
3478 TCTCTCTTAGTTCCTAG-ATGAACTTTCGAACTAGTCAAACTTTTATGAGTTC-TTT-T-ATAAC
64 TCTCT-TTTGTTCTTGGCA--AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAAC
** * * * * * * *
3539 TTACGTTCCTTAAAGTATTC-TG-TGTTATCCATTCCTTCTAGAAATTTTTTGATCATTGCATGT
126 TTTGGTTCCTTAAAGTATTCAAGATG--ATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGC
* * * * *
3602 TCGAAAAATCGCATCATTTT-ATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
188 TCGGAAAATCGAATC-TTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTTGTCTTTGAA
* * * ** * * * ** *
3666 TTAAAATCATATTTATGTGAGATCATTTCTCTCTTGATTCTTAGACAAACTTCTAAACTTGTCAA
252 TTAAAAACTTATTTATGTGAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAA
* * * * ** * *** *
3731 GCTTTTACTATTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAG-------------ACG---
317 ACTTTTACGAGTTATGATACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGACC
* * * *
3780 -A---TCCAAACATTCCATGCTCGAGAAATCGCATCATTCGATCTAAATATTTTGTCATTTTGTA
382 AATTTTCCAAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
3841 AACAAATTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
447 AACAAATTTTGGTC-TTCAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTAGTTCTTAG
* * * *
3906 ATGAACTTCCAAACTTGTCAAACTTTTATGAGC-TCTTTTATAACTTAGGTTCCTTAAAGCATTC
511 ATGAACTT-CTAACTTGTCAAGCTTTTATGA-CTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * * * ** * * *
3970 TATG-CGATCCATTCCTTCTACAAATTTTTCGAACATTTAATGGTCGGAAAATCGCATC-TTTTG
574 -AAGACGATCCATTCCTTCGAC-AATATTCCGAACATTCCATGCTCGGGAAATAGCATCATTTTG
*
4033 ATCTAAAAAC
637 -TCTAAATAC
* * ** * * *
4043 TTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAGTTAAAAACATATCGACGTGGGATTTGTCTC
1 TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAATATATTTACGTGAGAATTGTTTC
* * *
4107 TCTCTTGGTTCTTGGACGAACCTCCGAACTTGTCAAACTTTTACAAGTTC-TTT-TAA-AACTTT
66 TCT-TTTGTTCTTGG-CAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAACTTT
* * * * * * *
4169 TGTTCCTTGAAGTATT-ATAAATGATCCACTT-CATCGAGCAATTTTCGAACATTTCATTCTCCG
129 GGTTCCTTAAAGTATTCA-AGATGATCCA-TTCCTTCGAGCAATTTTCGAACATTCCATGCTCGG
* * * *
4232 AAAATTGAATCTTTTGGTTTAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAA
192 AAAATCGAATCTTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAA
*
4296 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTACCGAACTTGTAAAACTT
257 AACTTATTTATGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTT
**
4361 TTACGAGTTATTTTACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGACCAATT
321 TTACGAGTTATGATACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGACCAATT
* * *
4426 TTCCAAACATTCCATGCTCTAGAAATTGCATCTTTTGGTCTAAATAGTTTGTCATTTTGAAAACC
386 TTCCAAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-C
* * *
4491 AAGTTTTGGTCTTCAAATTAAAAACATATTTACGTGAGAATTTTTTCTC-CTTTGTTCTTAGATG
450 AAATTTTGGTCTTC-AATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTAGTTCTTAGATG
* *
4555 AACTTCTGAACTAGTCAAGCTTTTATGTCTTCTTTTATAACTTTGGTTCCTTATAA-TATTCAAG
514 AACTTCT-AACTTGTCAAGCTTTTATGACTTCTTTTATAACTTTGGTTCCTTA-AAGTATTCAAG
4619 ACGATCCATTCCTTCGATCAATATTCCGAACATTCCATGCTCGGGAAATAGCATCATTTTGTCTA
577 ACGATCCATTCCTTCGA-CAATATTCCGAACATTCCATGCTCGGGAAATAGCATCATTTTGTCTA
*
4684 AATAG
641 AATAC
* * * *
4689 TTTGTCATTTTGCAAACAACTTTTTGGTCTTTCAATTAAAAATATATTTATGTGAGAATTATTTC
1 TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAATATATTTACGTGAGAATTGTTTC
* * * *
4754 TCTTTTGATTCTTAGGCAAACTTCTGAACTTGTCAAGCTTTTACTATTTCTTTTATAATAACTTT
66 TCTTTTG-TTCTT-GGCAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAACTTT
* * *
4819 GGTTCCTTAAAGTATTCAGGATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTCGGG
129 GGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGA
* * * * * * *
4884 AAATCGTACCGTTCGGTCAAAATAGCTTGTCATTTTGTGAACAACTTTTTGT-TAATGAATTAAA
193 AAATCGAATCTTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTTGTCT-TTGAATTAAA
* * * * *
4948 TACTTATTTATGTGTAAATTGTTTCTCCCTTGGTTCTTGGACGAACTTTCGAACTAGGAAAACTT
257 AACTTATTTATGTG-AAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTT
* * * * * * * * *
5013 TTACTATTTCTGATATAACTTTGGTTCCTTAAAGTTTTCAAGATGATCTATTTCTTCGACCAATT
321 TTACGAGTTATGATACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGACCAATT
* *
5078 TTGCGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
386 TTCCAAACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
** * * * * *
5143 TCTTTTGTTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTT-TCTCTTGGTTCTTAGACG
451 AATTTTGGTC-TTCAATTAAAAACTTATTTACGTGAGAATT-TTTTCTCTCTTAGTTCTTAGATG
* * * *
5207 AACTTCTATACTTTTCAAGCTTTTACGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGA
514 AACTTCTA-ACTTGTCAAGCTTTTATGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * * * * **
5272 CGATCCATTCTTTCGAGCTATATTCCAAACATTCCATGCTCGAGAAATTGCATCATTCGGTCTAA
578 CGATCCATTCCTTCGA-CAATATTCCGAACATTCCATGCTCGGGAAATAGCATCATTTTGTCTAA
*
5337 ATAT
642 ATAC
*
5341 TTTGTCATTTTGTAAACAAATTTTT-GTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTT
1 TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAA-TATATTTACGTGAGAATTGTTT
* *
5404 CTCTCTTTGTTCTTGG-ATGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAAT---T
65 CTCT-TTTGTTCTTGGCA--AACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAACT
** * * * * * * *
5465 GAGGTTCCTTAAAGCATTCTATG-CGATCCTTTCCTTCTA-CAAATTTTTCGAACATTCAATGGT
127 TTGGTTCCTTAAAGTATTC-AAGATGATCCATTCCTTCGAGC-AA-TTTTCGAACATTCCATGCT
* * *
5528 CGGAAAATCGCATCTTTTGATCTAAATA-CTTTGTCATTTTGTAAAGAA-TTTTTGGTCTTTGAA
189 CGGAAAATCGAATCTTTTGGTCTAAATAGC-TTGTCATTTTGTAAACAACTTTTT-GTCTTTGAA
* * * * * *
5591 TTAAAAACTTATTGACGTGGGAATTGTTTCTCTCTTGGTTTTTGGACGAACCTCCGAACTTGTCA
252 TTAAAAACTTATTTATGT-GAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAA
*
5656 AACTTTTACAAGTT
316 AACTTTTACGAGTT
5670 CTTTCAAAAC
Statistics
Matches: 2392, Mismatches: 402, Indels: 226
0.79 0.13 0.07
Matches are distributed among these distances:
624 7 0.00
625 182 0.08
626 179 0.07
627 125 0.05
628 5 0.00
629 3 0.00
633 1 0.00
639 3 0.00
643 1 0.00
645 4 0.00
646 216 0.09
647 131 0.05
648 158 0.07
649 73 0.03
650 333 0.14
651 346 0.14
652 364 0.15
653 99 0.04
654 157 0.07
655 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (645 bp):
TTTGTCATTTTGTAAACAACTTTTTGGTCTTTGAATTAAAAATATATTTACGTGAGAATTGTTTC
TCTTTTGTTCTTGGCAAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAATAACTTTGG
TTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTCGAACATTCCATGCTCGGAAAA
TCGAATCTTTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACT
TATTTATGTGAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTAAAACTTTTACG
AGTTATGATACAACTTTGGTTCCATAAAGTATTCAAGATCATCCATTTCTACGACCAATTTTCCA
AACATTCCATGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
TGGTCTTCAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTAGTTCTTAGATGAACTTCT
AACTTGTCAAGCTTTTATGACTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGACAATATTCCGAACATTCCATGCTCGGGAAATAGCATCATTTTGTCTAAATAC
Done.