Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006453.1 Kokia drynarioides strain JFW-HI SEQ_121036, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5070
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34


Found at i:850 original size:16 final size:17

Alignment explanation


    Indices: 816--859  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 17

        806 TCTATTTGTA

                             
        816 TTATT-TACT-TATATC
          1 TTATTATACTATATATC

                             
        831 TTATTATACTATATAT-
          1 TTATTATACTATATATC

                    *    
        847 TTATTATATTATA
          1 TTATTATACTATA

        860 CGCATCATAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  15    5  0.19
  16   16  0.62
  17    5  0.19

ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59


Consensus pattern (17 bp):   
TTATTATACTATATATC

Found at i:2300 original size:16 final size:17

Alignment explanation


    Indices: 2269--2304  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 17

       2259 ATTATTTGCT

                             
       2269 TATATCTTAGTATATTA
          1 TATATCTTAGTATATTA

                     *       
       2286 TATAT-TTATTATATTA
          1 TATATCTTAGTATATTA

               
       2302 TAT
          1 TAT

       2305 TTACGCATCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  16   13  0.72
  17    5  0.28

ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58


Consensus pattern (17 bp):   
TATATCTTAGTATATTA
Done.