Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006454.1 Kokia drynarioides strain JFW-HI SEQ_121037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4543
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:4121 original size:9 final size:9

Alignment explanation


    Indices: 4104--4147  Score: 52
    Period size: 9  Copynumber: 4.9  Consensus size: 9

       4094 GATTGACCTT

                     
       4104 GAAGAGAGA
          1 GAAGAGAGA

              *      
       4113 GAGGAGAGA
          1 GAAGAGAGA

                   * 
       4122 GAAGAGAAA
          1 GAAGAGAGA

             **      
       4131 GGGGAGAGA
          1 GAAGAGAGA

                    
       4140 GAAGAGAG
          1 GAAGAGAG

       4148 GATTTTGAGA


Statistics
Matches: 27,  Mismatches: 8, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (9 bp):   
GAAGAGAGA

Found at i:4127 original size:18 final size:18

Alignment explanation


    Indices: 4104--4147  Score: 70
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       4094 GATTGACCTT

                              
       4104 GAAGAGAGAGAGGAGAGA
          1 GAAGAGAGAGAGGAGAGA

                   *  *       
       4122 GAAGAGAAAGGGGAGAGA
          1 GAAGAGAGAGAGGAGAGA

                    
       4140 GAAGAGAG
          1 GAAGAGAG

       4148 GATTTTGAGA


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (18 bp):   
GAAGAGAGAGAGGAGAGA

Done.