Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006456.1 Kokia drynarioides strain JFW-HI SEQ_121039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3682
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34


Found at i:858 original size:9 final size:9

Alignment explanation


    Indices: 827--870  Score: 54
    Period size: 9  Copynumber: 4.9  Consensus size: 9

        817 GGGGCAAATT

                      
        827 TTTCTTCTTC
          1 TTTCTTC-TC

              *      
        837 TTCCTTCTC
          1 TTTCTTCTC

                     
        846 -TTCTTCTC
          1 TTTCTTCTC

                     
        854 TTTCTTCTC
          1 TTTCTTCTC

              *     
        863 TTGCTTCT
          1 TTTCTTCT

        871 TTGTCGACTT


Statistics
Matches: 30,  Mismatches: 3, Indels: 3
        0.83            0.08        0.08

Matches are distributed among these distances:
   8    7  0.23
   9   17  0.57
  10    6  0.20

ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64


Consensus pattern (9 bp):   
TTTCTTCTC
Done.