Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006457.1 Kokia drynarioides strain JFW-HI SEQ_121040, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33342
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:32176 original size:27 final size:27

Alignment explanation


    Indices: 32123--32176  Score: 63
    Period size: 27  Copynumber: 2.0  Consensus size: 27

      32113 ATGAATGCTG

                               *  *    
      32123 AGAAGGATGAAGAAAAAGAGGATGAAA
          1 AGAAGGATGAAGAAAAAGACGACGAAA

                        **  *          
      32150 AGAAGGATGAAGCGAAGGACGACGAAA
          1 AGAAGGATGAAGAAAAAGACGACGAAA

      32177 CATTGACACC


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  27   22  1.00

ACGTcount: A:0.54, C:0.06, G:0.35, T:0.06


Consensus pattern (27 bp):   
AGAAGGATGAAGAAAAAGACGACGAAA

Found at i:33260 original size:11 final size:12

Alignment explanation


    Indices: 33237--33267  Score: 55
    Period size: 11  Copynumber: 2.7  Consensus size: 12

      33227 CAAAAATGAG

                        
      33237 AAAAAGAAGAAA
          1 AAAAAGAAGAAA

                        
      33249 AAAAAGAA-AAA
          1 AAAAAGAAGAAA

                    
      33260 AAAAAGAA
          1 AAAAAGAA

      33268 TAAATTGCTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   11  0.58
  12    8  0.42

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (12 bp):   
AAAAAGAAGAAA
Done.