Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006461.1 Kokia drynarioides strain JFW-HI SEQ_121044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3579
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33


Found at i:3557 original size:17 final size:18

Alignment explanation


    Indices: 3527--3561  Score: 54
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       3517 AATACAAAAA

                               
       3527 TAGTATCGATATAAAATTT
          1 TAGTATCGA-ATAAAATTT

                             
       3546 TAGTATCG-ATAAAATT
          1 TAGTATCGAATAAAATT

       3562 CAATACGCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    8  0.50
  19    8  0.50

ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40


Consensus pattern (18 bp):   
TAGTATCGAATAAAATTT
Done.