Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006468.1 Kokia drynarioides strain JFW-HI SEQ_121051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5545
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Found at i:413 original size:56 final size:56
Alignment explanation
Indices: 327--438 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
317 TATTCAACTT
327 TGCTTCACTTTTTCAAATGAGTAATAGACTATCCTATATCCCATCCATTATAATAG
1 TGCTTCACTTTTTCAAATGAGTAATAGACTATCCTATATCCCATCCATTATAATAG
383 TGCTTCACTTTTTCAAATGAGTAATAGACTATCCTATATCCCATCCATTATAATAG
1 TGCTTCACTTTTTCAAATGAGTAATAGACTATCCTATATCCCATCCATTATAATAG
439 AAACATTTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (56 bp):
TGCTTCACTTTTTCAAATGAGTAATAGACTATCCTATATCCCATCCATTATAATAG
Found at i:4580 original size:56 final size:56
Alignment explanation
Indices: 4494--4605 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
4484 TATTCTACTT
4494 TGCTTCACTTTTTCAAATGAGTAATAAACTATCCTATATCCCATCCATTATAATAG
1 TGCTTCACTTTTTCAAATGAGTAATAAACTATCCTATATCCCATCCATTATAATAG
4550 TGCTTCACTTTTTCAAATGAGTAATAAACTATCCTATATCCCATCCATTATAATAG
1 TGCTTCACTTTTTCAAATGAGTAATAAACTATCCTATATCCCATCCATTATAATAG
4606 AAACATTTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (56 bp):
TGCTTCACTTTTTCAAATGAGTAATAAACTATCCTATATCCCATCCATTATAATAG
Done.