genome.fa.s6469.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01006469.1 Kokia drynarioides strain JFW-HI SEQ_121052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164225

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--438	56	2.0	56	100	0	224	32	21	8	37	1.84
7221--7267	25	1.9	24	86	4	67	57	6	4	31	1.43
20035--20128	40	2.4	39	83	1	116	27	14	21	36	1.93
20035--20131	39	2.5	40	82	1	124	26	15	21	36	1.93
22370--22478	54	2.0	54	94	3	193	43	8	22	26	1.81
22847--22880	17	2.1	16	88	5	50	76	0	0	23	0.79
23860--23926	29	2.3	29	81	0	71	40	23	10	25	1.86
23959--23987	2	14.5	2	100	0	58	48	0	0	51	1.00
41872--41958	15	5.9	15	76	11	81	26	21	24	27	1.99
41873--41988	30	3.9	30	79	4	128	27	22	24	25	2.00
41860--41988	59	2.2	60	87	4	181	27	21	24	26	1.99
49612--49657	23	2.0	24	87	12	69	39	6	21	32	1.79
55295--55327	16	2.1	16	94	0	57	57	9	0	33	1.30
55401--55430	13	2.3	13	94	0	51	23	3	16	56	1.55
57169--57214	24	1.9	23	86	8	65	56	6	4	32	1.45
57817--57907	45	2.0	45	100	0	182	43	19	2	34	1.63
58279--58320	18	2.3	19	83	4	59	9	14	0	76	1.02
58279--58320	19	2.3	18	84	11	59	9	14	0	76	1.02
58302--58365	23	2.8	22	81	13	76	10	10	3	75	1.17
63306--63351	24	1.9	23	86	8	65	56	6	4	32	1.45
65665--65728	31	2.1	31	84	0	83	29	15	10	43	1.81
75013--75043	10	2.9	11	90	9	55	48	16	29	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77629--78197	145	4.0	143	81	6	648	43	2	8	44	1.50
77868--77938	20	3.5	20	75	17	67	45	0	9	45	1.37
78764--78798	16	2.3	15	90	5	52	20	2	5	71	1.19
78753--78813	21	3.0	20	71	19	54	22	3	4	68	1.23
78890--78940	3	17.0	3	95	0	93	33	1	0	64	1.05
80709--80813	40	2.6	40	93	3	176	33	15	9	41	1.79
83391--83592	110	1.8	110	85	3	282	42	16	12	28	1.85
83859--83938	32	2.6	30	80	9	97	65	2	7	25	1.32
83838--83934	31	3.2	30	77	17	94	64	3	9	22	1.36
83874--83984	55	2.0	56	84	5	145	60	2	12	24	1.45
85571--85649	39	2.0	40	97	2	151	25	18	22	32	1.97
85625--86053	81	5.3	80	82	4	459	24	16	27	31	1.96
85625--86053	42	10.5	41	80	9	425	24	16	27	31	1.96
85625--86053	162	2.6	162	86	4	560	24	16	27	31	1.96
86117--86513	95	4.1	95	74	7	334	28	17	18	35	1.94
86280--86566	98	2.9	98	72	14	266	27	17	18	35	1.94
86152--86558	196	2.1	193	85	2	528	28	17	18	35	1.94
86248--86553	98	3.1	97	70	10	253	28	17	18	35	1.94
105996--106041	18	2.6	18	74	16	51	65	2	10	21	1.35
107771--107829	28	2.1	28	87	6	84	37	33	3	25	1.73
115314--115345	12	2.7	12	95	0	55	15	9	0	75	1.05
115679--115730	18	2.9	18	75	16	54	19	5	1	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119770--119909	65	2.2	65	94	0	244	34	19	0	46	1.50
123472--123569	48	2.0	48	96	0	178	22	12	7	58	1.58
123992--124024	12	2.8	12	90	0	57	15	12	0	72	1.12
126622--126650	14	2.1	14	100	0	58	41	0	10	48	1.37
127693--127757	31	2.1	31	88	0	94	52	9	18	20	1.72
137140--137176	19	1.9	19	100	0	74	37	35	10	16	1.83
142572--142596	5	5.0	5	100	0	50	20	0	0	80	0.72
144446--144489	21	2.0	22	86	4	63	52	9	31	6	1.59
153717--153761	18	2.4	19	85	3	56	64	0	33	2	1.06
158536--158601	30	2.2	29	81	10	71	74	4	1	19	1.07
158565--158631	21	3.4	18	72	20	55	74	2	2	19	1.08
158536--158631	10	9.6	10	72	20	60	73	3	3	19	1.10
158578--158617	11	3.7	11	83	6	55	72	5	5	17	1.21
160478--160502	13	1.9	13	100	0	50	24	4	8	64	1.38
160968--161008	20	2.0	21	85	9	57	63	4	19	12	1.46

Tables:   1

The End!