Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006470.1 Kokia drynarioides strain JFW-HI SEQ_121053, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6698
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:1005 original size:56 final size:56
Alignment explanation
Indices: 938--1049 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
928 CAAAATGTTT
938 CTATTATAATGGATGGGATATAGGATAGTCTATTACTCATTTGAAAAAGTGAAGCA
1 CTATTATAATGGATGGGATATAGGATAGTCTATTACTCATTTGAAAAAGTGAAGCA
994 CTATTATAATGGATGGGATATAGGATAGTCTATTACTCATTTGAAAAAGTGAAGCA
1 CTATTATAATGGATGGGATATAGGATAGTCTATTACTCATTTGAAAAAGTGAAGCA
1050 AAGTTGAATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (56 bp):
CTATTATAATGGATGGGATATAGGATAGTCTATTACTCATTTGAAAAAGTGAAGCA
Found at i:3274 original size:41 final size:41
Alignment explanation
Indices: 3217--3313 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
3207 TGAATTTTAT
3217 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
1 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
*
3258 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCTAC
1 TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
* *
3299 CTTGACAAGAATTCT
1 TTTAACAAGAATTCT
3314 TTACGAACAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (41 bp):
TTTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCAC
Done.