Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006488.1 Kokia drynarioides strain JFW-HI SEQ_121072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15537
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:4268 original size:23 final size:20

Alignment explanation


    Indices: 4226--4269  Score: 52
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       4216 GGACTTAACT

                           *    
       4226 TTTAATATTTTTACACTTTA
          1 TTTAATATTTTTACAATTTA

                                   
       4246 TTTAATAATGTTTTACAAATTTA
          1 TTTAAT-AT-TTTTAC-AATTTA

             
       4269 T
          1 T

       4270 AATTTTTTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  20    6  0.30
  21    2  0.10
  22    6  0.30
  23    6  0.30

ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57


Consensus pattern (20 bp):   
TTTAATATTTTTACAATTTA

Found at i:14675 original size:2 final size:2

Alignment explanation


    Indices: 14668--14703  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

      14658 TGTAGTGGCC

                                                                 
      14668 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

      14704 TGTCTGAGTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Done.