Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006496.1 Kokia drynarioides strain JFW-HI SEQ_121080, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2613
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38


Found at i:1014 original size:19 final size:20

Alignment explanation


    Indices: 992--1034  Score: 61
    Period size: 19  Copynumber: 2.1  Consensus size: 20

        982 TTTTAACTTC

                    *           
        992 AATTTTAGGAAT-AATTTTA
          1 AATTTTAGAAATAAATTTTA

                                 
       1011 AATTTTAGAAATAAAATTTTA
          1 AATTTTAGAAAT-AAATTTTA

               
       1032 AAT
          1 AAT

       1035 ATTTTTTATT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19   11  0.52
  21   10  0.48

ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44


Consensus pattern (20 bp):   
AATTTTAGAAATAAATTTTA

Found at i:2206 original size:50 final size:50

Alignment explanation


    Indices: 2129--2228  Score: 173
    Period size: 50  Copynumber: 2.0  Consensus size: 50

       2119 TGACAAAAAA

                     *            *                           
       2129 CTTCTAATATTACAATCACTCACCCCGTAACTCCTCACTTACAATCAAAT
          1 CTTCTAATAGTACAATCACTCAACCCGTAACTCCTCACTTACAATCAAAT

                                                 *            
       2179 CTTCTAATAGTACAATCACTCAACCCGTAACTCCTCAGTTACAATCAAAT
          1 CTTCTAATAGTACAATCACTCAACCCGTAACTCCTCACTTACAATCAAAT

       2229 TTTACTCTTC


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  50   47  1.00

ACGTcount: A:0.35, C:0.32, G:0.04, T:0.29


Consensus pattern (50 bp):   
CTTCTAATAGTACAATCACTCAACCCGTAACTCCTCACTTACAATCAAAT
Done.