Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006519.1 Kokia drynarioides strain JFW-HI SEQ_121103, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13016
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:11483 original size:16 final size:15

Alignment explanation


    Indices: 11458--11487  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

      11448 CAACAAAAAA

                           
      11458 TAAAAATTTTGAAAT
          1 TAAAAATTTTGAAAT

                           
      11473 TAAATAATTTTGAAA
          1 TAAA-AATTTTGAAA

      11488 GTCCAGTTAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    4  0.29
  16   10  0.71

ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40


Consensus pattern (15 bp):   
TAAAAATTTTGAAAT
Done.