Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000652.1 Kokia drynarioides strain JFW-HI SEQ_111631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31


Found at i:876 original size:24 final size:24

Alignment explanation


    Indices: 848--905  Score: 71
    Period size: 24  Copynumber: 2.4  Consensus size: 24

        838 ACAGTCCGCA

                                  * 
        848 ACACTTCTCAACTGCTCGAAGTTC
          1 ACACTTCTCAACTGCTCGAAGTCC

            *      *   *      *     
        872 GCACTTCACAATTGCTCGTAGTCC
          1 ACACTTCTCAACTGCTCGAAGTCC

                      
        896 ACACTTCTCA
          1 ACACTTCTCA

        906 GTTCAAATTT


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.24, C:0.34, G:0.12, T:0.29


Consensus pattern (24 bp):   
ACACTTCTCAACTGCTCGAAGTCC

Found at i:935 original size:30 final size:30

Alignment explanation


    Indices: 896--961  Score: 78
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        886 CTCGTAGTCC

                             *      *      
        896 ACACTTCTCAGTTCAAATTTCACAGCTGCGA
          1 ACAC-TCTCAGTTCAAACTTCACAACTGCGA

                        ***               
        927 ACACTCTCAGTTTGCACTTCACAACTGCGA
          1 ACACTCTCAGTTCAAACTTCACAACTGCGA

                 
        957 ACACT
          1 ACACT

        962 TCTAACAAAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  30   26  0.87
  31    4  0.13

ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27


Consensus pattern (30 bp):   
ACACTCTCAGTTCAAACTTCACAACTGCGA
Done.