Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006520.1 Kokia drynarioides strain JFW-HI SEQ_121104, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3178
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:872 original size:16 final size:17

Alignment explanation


    Indices: 843--874  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        833 GAAAGTGTAA

                             
        843 AAAGAAATAGAAAAATG
          1 AAAGAAATAGAAAAATG

                            
        860 AAAGAAA-AGAAAAAT
          1 AAAGAAATAGAAAAAT

        875 AATGGCATCA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    8  0.53
  17    7  0.47

ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09


Consensus pattern (17 bp):   
AAAGAAATAGAAAAATG
Done.