Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006521.1 Kokia drynarioides strain JFW-HI SEQ_121105, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3458
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:2073 original size:17 final size:17

Alignment explanation


    Indices: 2040--2077  Score: 51
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       2030 TTAAAAGATC

                        *    
       2040 AACACTACCAAATAAAA
          1 AACACTACCAAAGAAAA

                              
       2057 AACAC-ACCTAAAGAAAA
          1 AACACTACC-AAAGAAAA

                
       2074 AACA
          1 AACA

       2078 ATAGAAAGTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  16    3  0.16
  17   16  0.84

ACGTcount: A:0.66, C:0.24, G:0.03, T:0.08


Consensus pattern (17 bp):   
AACACTACCAAAGAAAA
Done.