Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006535.1 Kokia drynarioides strain JFW-HI SEQ_121120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1135
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.25

Warning! 64 characters in sequence are not A, C, G, or T


Found at i:454 original size:3 final size:3

Alignment explanation


    Indices: 446--506  Score: 104
    Period size: 3  Copynumber: 20.0  Consensus size: 3

        436 TTAATGACAT

                                                                        
        446 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA

                  *            
        492 TAA TAT TAA TAA TAA
          1 TAA TAA TAA TAA TAA

        507 CATTAATTAA


Statistics
Matches: 55,  Mismatches: 2, Indels: 2
        0.93            0.03        0.03

Matches are distributed among these distances:
   3   52  0.95
   4    3  0.05

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
TAA

Done.