Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006536.1 Kokia drynarioides strain JFW-HI SEQ_121121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37


Found at i:354 original size:3 final size:3

Alignment explanation


    Indices: 346--409  Score: 110
    Period size: 3  Copynumber: 21.0  Consensus size: 3

        336 TTAATTAATG

                        *                                               
        346 TTA TTA TTA ATA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                                   
        392 TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA

        410 ATGTCATTAA


Statistics
Matches: 58,  Mismatches: 2, Indels: 2
        0.94            0.03        0.03

Matches are distributed among these distances:
   3   55  0.95
   4    3  0.05

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTA

Done.