Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006539.1 Kokia drynarioides strain JFW-HI SEQ_121124, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4543
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Found at i:1437 original size:649 final size:648
Alignment explanation
Indices: 148--4539 Score: 5134
Period size: 649 Copynumber: 6.8 Consensus size: 648
138 GAAATCGCAT
* * *
148 TAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT-CCTCGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAGAA
* * * * * *
212 TTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGCACTTGTTAAACTTGTACGAG-T-TGTTATAA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
273 ATTTGGTTCCTTAAAGTATTCAAGATGATTCATTCCATTCGAGCAATTTTTTC-AACATTCCACG
130 CTTCGATTCCTTAAAGTATTCAAGA-GATCCATTCC-TTCGAGCAA-TTTTTCGAACATTCCATG
* * *
337 -TTCGGGAAATCGCATCATTTGGTCTAAACAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGA
192 CTT-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * ** *
401 ATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTGGTTAATGGACGAACTTTCGAACTTGTC
256 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTC
* *** * * * * *
466 AAACTTTTACGATTTCTTTTATAACTTTTATTGCTTAAAGTATTCAATACGATCTATATTCCATC
321 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCAT-TCCCA-C
* * * ** * *
531 GAGCAATTTTTTGAACAGTCCATGCTCGGGGAATCGCATCATTTGGTCTAACCAGTTTCTCAATT
384 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * * * *
596 TATAAACAAGTTTTAGTTTTTGAATTAAAAACTTATTTACGTGAAAATTATTTGTCTCTTTGTTC
449 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTC
* *
661 TTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTT-TGGA-TACTTAAAG
514 TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT--ATTCCTTAAAG
** * * *
724 TATTCAAGGTGATC-CATTCCATCGAGCAATTTTTCGAACATTCCATGATCTGGAAATTGCATCA
577 TATTCAAGAAGATCACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
*
788 TTTGATC
642 TTTGGTC
* * *
795 TTAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** *
860 TGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
925 TTCGATTCCTTAAAGTATTCAAGACATCCATTCCTTTGATCAATTTTCCAAACATTCGATGCTTG
131 TTCGATTCCTTAAAGTATTCAAGAGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTG
* * * * * *
990 AGAAATCGCATCATTAGGTCTAAATAGTTTTTCATTTCGTAAATAAGTTTTGGTCTTTAAATTAT
196 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
* * * ** * *
1055 AAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACCAACTTCCGAACTTGTCAAAAT
261 AAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACT
* *
1120 TTTACGAGTTATTTT-TAACTTCGGTTCCCTAAAGTATTCAAGAAGATCCATTCCCACGAGCAAT
326 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCACGAGCAAT
* * *
1184 TTTCTGAACATTCCATGCTCGGGAAATTGCATCGTTTGGTCTAAATAGTTCGTCATTTTGTAAAC
391 TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * *
1249 ATGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTATTTCTTGGAC
456 AAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
* * *
1314 GAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTACAGTATTCAAG
520 GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAG
* * * * * *
1379 ACGATCTACGTCCCATCGAGCAATTTTTCGAGCAGTCCATGCTCGGGGAATCGCATCATTTGGTC
585 AAGATC-ACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
1444 TAAATAGTTTGTCAATTTGTAAAAAAGTTTTGGTCTTT-AAGTTAAAAACTTATTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA
* * * *
1508 TTGTTTCACTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTTTATAA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
*
1573 CTTCGGA-TCCTTAAAGTATTCAAGATGATTCATTCCTTCGAGCAA-TTTTCGAACATTCCATG-
130 CTTC-GATTCCTTAAAGTATTCAAGA-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * *
1635 TTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAG
193 TTGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * * *
1700 TTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTAGGATGAATTTTCGATCTTGTCA
257 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCA
* * * * **
1765 AACTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAACAAGATCCATTCCTTCGAG
322 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCACGAG
* * * *
1830 CAATTTT-TCGAACATTCCATACTTGGGAAATTGCATCATTTGTTCTAAATAGTTTGTCATTTTG
387 CAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
1894 TAAATAAGTTTTGGTCTTTGAATTATAAACTT-TGTTACGTGAGAATTATTTCTCTCGTAGTTCT
451 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAATTGTTTCTCTCTTAGTTCT
* * * *
1958 TGGACAAAC-TTCTGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTC-AGTTCCATAAAGT
515 TGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTA-TTCCTTAAAGT
* * * * *
2021 TTTCAAGAAGATC-CACTCCAT-GAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCAT
578 ATTCAAGAAGATCACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
2084 TTGGTC
643 TTGGTC
* * * *
2090 TGAATAGTTCGTCATTTTGTAAACAAGTTTTAGTCTCTGAATTTAAAAACTTATTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA
* *
2155 TTGTTTCTCTC-TTGTTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTACTTTTATA
65 TTGTTTCTCTCTTTG-TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * *
2219 ACTTCTATTGCTTAAAGTATTCAAGACGATCTATGTTCCATT-GAGCAA-TTTTCGAGCAGTCCA
129 ACTTCGATTCCTTAAAGTATTCAAGA-GATCCA--TTCC-TTCGAGCAATTTTTCGAACATTCCA
* * * * *
2282 TGCTCG-GAGAATCGAATCATTTGGTCTAAACAGTTTGTCAATTTGTAAATAAGTTTTGGTCTTT
190 TGCTTGAGA-AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
**
2346 GAATTAAAAACTTATATT--GTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTTCGAACTT
254 GAATTAAAAACTTAT-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTT
* * * * *
2409 GTCAAACTTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGCATTCAAGACGAACCATTCCT
318 GTCAAAC-TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCC-
* *
2474 TCAC--GCAATTTT-TCAAACATTCTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
381 -CACGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* *
2536 CATTTCGTAAACAAGTTTTGGTCTTTTGAATTAAAAACCTATTTACGTGAGAATTGTTTCTCTCT
444 CATTTTGTAAACAAGTTTTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* * *
2601 TTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGA-TCCT
508 TAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-TATTCCT
* * * * * *
2665 TAAAGTATTCAAGAGGATC-CATTCCTTCGAACAATTTTTCGAAAATTCCATTCTTGGGAAATCG
572 TAAAGTATTCAAGAAGATCACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
2729 CATCATTTGGTC
637 CATCATTTGGTC
* * * *
2741 TAAACAGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TAAAAATCTTATTAACCTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAA
* * * * * * *
2805 TTGTTTCTCCCTTGGTTCATGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTTCCTTTATAG
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
2870 CTTTTTGGTTCCTTAATGTATTCAATATGATCCAATCCTTTGCA-CAA-CTTTCCAA-A--CCAT
130 C--TTCGATTCCTTAAAGTATTCAAGA-GATCCATTCCTTCG-AGCAATTTTTCGAACATTCCAT
*
2930 GCTT-AGGAAATCG---CA-----T-TAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTG
191 GCTTGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* * * *
2985 GATTAAAAACTTATTT-CCTCGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGCACTTG
255 AATTAAAAACTTATTTACGT-GAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTG
* * * * * * *
3047 TTAAACTTGTACGAG-T-TGTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATTCATT-CCAT
319 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCA-
* * * * *
3109 TCGAGCAATTTTTTCAACATTCCACGTTCGGGAAATCGCATCATTTGGTCTAAACAGTTTGTCAT
383 -CGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * *
3174 TTTGCAAACAAGTTTTGGTCTTTGAATTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTGGT
447 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGT
** * * *
3239 TAATGGACGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTTATTGCTTAAAG
512 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAG
* * * * * *
3304 TATTCAATACGATCTATATTCCATCGAGCAATTTTTTGAACAGTCCATGCTCGGGGAATCGCATC
577 TATTCAAGAAGATC-ACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
3369 ATTTGGTC
641 ATTTGGTC
** * * * * * *
3377 TAACCAGTTTCTCAATTTATAAACAAGTTTTAGTTTTTGAATTAAAAACTTATTTACGTGAAAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
3442 TATTTGTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * *
3507 TTTGGA-TACTTAAAGTATTCAAGGTGATCCATTCCATCGAGCAATTTTTCGAACATTCCATGAT
131 -TTCGATTCCTTAAAGTATTCAA-GAGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * * *
3571 CTG-GAAATTGCATCATTTGATCTTAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCATTGAAT
194 -TGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * *
3635 TAAAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAACTTGTCAA
258 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAA
* * *** *
3700 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG-ACATCCATTCCTTTGATC
323 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCACGAGC
** * * * *
3764 AATTTTCCAAACATTCGATGCTTGAGAAATCGCATCATTAGGTCTAAATAGTTTGTCATTTTGTA
388 AATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
3829 AATAAGTTTTGGTCTTTAAATTATAAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTTCTTGG
453 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * * * ** *
3894 ACCAACTTCCGAACTTGTCAAAATTTTACGAGTTATTTT-TAACTTCGGTTCCCTAAAGTATTCA
518 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCA
* *
3958 AGAAGATC-CATTCCCA-CGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATTGCATCGTTTG
583 AGAAGATCACATT-CCATCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTG
4020 GTC
646 GTC
* * *
4023 TAAATAGTTCGTCATTTTGTAAACATGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA
*
4088 TTGTTTCTCTCTTAT-TTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATA
65 TTGTTTCTCTCTT-TGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * *
4152 ACTTCTG-TTGCTTAAAGTATTCAAGACGATCTACATCCCATCGAGCAATTTTTCGAGCAGTCCA
129 ACTTC-GATTCCTTAAAGTATTCAAGA-GATC--CATTCCTTCGAGCAATTTTTCGAACATTCCA
* * * * * *
4216 TGCTCGGGGAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAAAAAGTTTTGGTCTTT-
190 TGCTTGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
* *
4280 AAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACTTG
255 AA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTG
* * * * **
4345 TCAAACTTTTACTAGTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCTTC
319 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCAC
* *
4410 GATCAATTTTC-GAACATTCCATGTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
384 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
4474 TGTAAACAAGTTTTGGCCTTTGAGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTC
449 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTC
4539 T
514 T
4540 AGGA
Statistics
Matches: 3195, Mismatches: 457, Indels: 184
0.83 0.12 0.05
Matches are distributed among these distances:
631 2 0.00
633 4 0.00
634 171 0.05
635 83 0.03
636 160 0.05
637 41 0.01
638 63 0.02
639 10 0.00
641 2 0.00
644 2 0.00
645 4 0.00
646 235 0.07
647 452 0.14
648 132 0.04
649 1300 0.41
650 366 0.11
651 144 0.05
652 24 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (648 bp):
TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
TTCGATTCCTTAAAGTATTCAAGAGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTG
AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACT
TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCACGAGCAAT
TTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG
AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAGA
AGATCACATTCCATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
Found at i:1549 original size:434 final size:433
Alignment explanation
Indices: 148--4539 Score: 5197
Period size: 434 Copynumber: 10.2 Consensus size: 433
138 GAAATCGCAT
* * *
148 TAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT-CCTCGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAGAA
* * * * * *
212 TTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGCACTTGTTAAACTTGTACGAG-T-TGTTATAA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * *
273 ATTTGGTTCCTTAAAGTATTCAAGATGATTCATT-CCATTCGAGCAATTTTTTCAACATTCCACG
130 CTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCA--CGAGCAATTTTCTGAACATTCCATG
* * *
337 TTCGGGAAATCGCATCATTTGGTCTAAACAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAA
193 CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * * **
402 TTAAAAAATTATTTACATGAGAATTGTTTCTCTCTTGGTTAATGGACGAACTTTCGAACTTGTCA
258 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* ** * * *
467 AACTTTTACGATTTCTTTTATAACTTTTATTGCTTAAAGTATTCAATACGATCTATATTCCATCG
323 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCT-CATTCCATCG
* * *
532 AGCAATTTTTTGAACAGTCCATGCTCGGGGAATCGCATCATTTGGTC
387 AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
** * * * * * *
579 TAACCAGTTTCTCAATTTATAAACAAGTTTTAGTTTTTGAATTAAAAACTTATTTACGTGAAAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * *
644 TATTTGTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * *
709 TTTGGATACTTAAAGTATTCAAGGTGATCCATT-CCATCGAGCAATTTT-TCGAACATTCCATGA
131 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCA-CGAGCAATTTTCT-GAACATTCCATGC
* * * * * *
772 TCTGGAAATTGCATCATTTGATCTTAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCATTGAAT
194 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* ** *
837 TAAAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAACTTGTCAA
259 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
902 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC-ATC-CATTCCTTTGAT
324 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCATTCCATCGAG
* * * * * *
965 CAATTTTCCAAACATTCGATGCTTGAGAAATCGCATCATTAGGTC
389 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * * * * *
1010 TAAATAGTTTTTCATTTCGTAAATAAGTTTTGGTCTTTAAATTATAAACTTTTTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * * *
1075 TGTTTCTCTCTTAGTTCTTGGACCAACTTCCGAACTTGTCAAAATTTTACGAGTTATTTT-TAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* *
1139 TTCGGTTCCCTAAAGTATTCAAGAAGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGCTC
131 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGCTC
* * * * *
1204 GGGAAATTGCATCGTTTGGTCTAAATAGTTCGTCATTTTGTAAACATGTTTTAGTCTTTGAATTT
196 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TT
*
1269 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAT-TTCTTGGACGAACTTTCAAACTTGTCAA
260 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-TGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
1333 ACTTTTACGAGTTCTTTTATAACTTCTATTGCTTACAGTATTCAAGACGATCTACGTCCCATCGA
324 ACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCT-CATTCCATCGA
* * *
1398 GCAATTTTTCGAGCAGTCCATGCTCGGGGAATCGCATCATTTGGTC
388 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
1444 TAAATAGTTTGTCAATTTGTAAAAAAGTTTTGGTCTTT-AAGTTAAAAACTTATTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA
* * * *
1508 TTGTTTCACTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTTTATAA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * ** *
1573 CTTCGGATCCTTAAAGTATTCAAGATGATTCATTCCTTCGAGCAATTTTC-GAACATTCCATGTT
130 CTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGCT
* * *
1637 CAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAGTT
195 CGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * * * *
1702 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTAGGATGAATTTTCGATCTTGTCAAA
260 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
1767 CTTTTACGAGTTATTTTTTAACTTCGATTCCTTAAAGTATTCAACAAGATC-CATTCCTTCGAGC
325 CTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCATTCCATCGAGC
* * * *
1831 AATTTTTCGAACATTCCATACTTGGGAAATTGCATCATTTGTTC
390 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* *
1875 TAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTCTTTGAATTATAAACTT-TGTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAA
* * * * * *
1939 TTATTTCTCTCGTAGTTCTTGGACAAAC-TTCTGAACTTGTCAAACTTTTACGAGTTATTTTTTA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * * * *
2003 ACTTCAGTTCCATAAAGTTTTCAAGAAGATCCACT-CCATGAGCAATTTTCCGAACATTCCATGC
129 ACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGC
* * * * * *
2067 TCGAGAAATCACATCATTTGGTCTGAATAGTTCGTCATTTTGTAAACAAGTTTTAGTCTCTGAAT
194 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-
2132 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGTTTCTTGGACGAACTTTCGAACTTGTC
258 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TTCTTGGACGAACTTTCGAACTTGTC
* * * *
2196 AAACTTTTACTAGTACTTTTATAACTTCTATTGCTTAAAGTATTCAAGACGATCT-ATGTTCCAT
322 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCA--TTCCAT
* * * *
2260 TGAGCAA-TTTTCGAGCAGTCCATGCTC-GGAGAATCGAATCATTTGGTC
385 CGAGCAATTTTTCGAACATTCCATGCTCGGGA-AATCGCATCATTTGGTC
* * *
2308 TAAACAGTTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAAACTTATATT--GTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT-TTACGTGAGAA
* *
2371 TTGTTTCTCTCTTTGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTTACTAGTTCTTTTATA
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC-TTTTACGAGTTCTTTTATA
* * * * * *
2436 ACTTCGGATCCTTAAAGCATTCAAGACGAACCATTCCTTCAC--GCAATTTT-TCAAACATTCTA
129 ACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCC--CACGAGCAATTTTCT-GAACATTCCA
*
2498 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCTTTT
191 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC-TTT
*
2563 GAATTAAAAACCTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTG
255 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTG
* * *
2628 TCAAACTTTTACAAGTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGAGGATC-CATTCCT
320 TCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCTCATTCCA
* * * *
2691 TCGAACAATTTTTCGAAAATTCCATTCTTGGGAAATCGCATCATTTGGTC
384 TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
2741 TAAACAGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TAAAAATCTTATTAACCTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTGAGAA
* * * * * * *
2805 TTGTTTCTCCCTTGGTTCATGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTTCCTTTATAG
65 TTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *** * *
2870 CTTTTTGGTTCCTTAATGTATTCAATATGATCCAATCCTTTGCA-CAACTTTC-CAA-A--CCAT
130 C--TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACG-AGCAATTTTCTGAACATTCCAT
** * *
2930 GCTTAGGAAATCG---CA-----T-TAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGG
192 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * *
2986 ATTAAAAACTTATTT-CCTCGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGCACTTGT
257 ATTAAAAACTTATTTACGT-GAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGT
* * * * * * *
3048 TAAACTTGTACGAG-T-TGTTATAAATTTGGTTCCTTAAAGTATTCAAGATGAT-TCATTCCATT
321 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCATTCCA-T
* *
3110 CGAGCAATTTTTTC-AACATTCCACGTTCGGGAAATCGCATCATTTGGTC
385 CGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
3159 TAAACAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAAATTATTTACATGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** *
3224 TGTTTCTCTCTTGGTTAATGGACGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
*** * * * * * * *
3289 TTTTATTGCTTAAAGTATTCAATACGATCTATATTCCATCGAGCAATTTTTTGAACAGTCCATGC
131 TTCGGTTCCTTAAAGTATTCAAGATGATCCAT-TCCCA-CGAGCAATTTTCTGAACATTCCATGC
* ** * * * * *
3354 TCGGGGAATCGCATCATTTGGTCTAACCAGTTTCTCAATTTATAAACAAGTTTTAGTTTTTGAAT
194 TCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAT
* * *
3419 TAAAAACTTATTTACGTGAAAATTATTTGTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
259 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * **
3484 ACTTTTACTAGTTCTTTTATAACTTTGGA-TACTTAAAGTATTCAAGGTGATC-CATTCCATCGA
324 ACTTTTACGAGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGACGATCTCATTCCATCGA
* * * *
3547 GCAATTTTTCGAACATTCCATGATCTGGAAATTGCATCATTTGATC
388 GCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * *
3593 TTAATAGTTTGTCATTTCGTAAACAAGTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* ** *
3658 TGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
66 TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * *** * ** * *
3723 TTCGATTCCTTAAAGTATTCAAGA-CATCCATTCCTTTGATCAATTTTCCAAACATTCGATGCTT
131 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGCTC
* * * *
3787 GAGAAATCGCATCATTAGGTCTAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTCTTTAAATTA
196 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * *
3852 TAAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACCAACTTCCGAACTTGTCAAAA
261 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * *
3917 TTTTACGAGTTATTTT-TAACTTCGGTTCCCTAAAGTATTCAAGAAGATC-CATTCCCA-CGAGC
326 TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCATT-CCATCGAGC
* *
3979 AA-TTTTCTGAACATTCCATGCTCGGGAAATTGCATCGTTTGGTC
390 AATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * *
4023 TAAATAGTTCGTCATTTTGTAAACATGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAA
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAA
*
4088 TTGTTTCTCTCTTAT-TTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATA
65 TTGTTTCTCTCTT-TGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * *
4152 ACTTCTGTTGCTTAAAGTATTCAAGACGATCTACA-TCCCATCGAGCAATTTT-TCGAGCAGTCC
129 ACTTCGGTTCCTTAAAGTATTCAAGATGATC--CATTCCCA-CGAGCAATTTTCT-GAACATTCC
* * * *
4215 ATGCTCGGGGAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAAAAAGTTTTGGTCTTT
190 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * *
4280 -AAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACTT
255 GAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTT
*
4344 GTCAAACTTTTACTAGTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACGAT-TCATTCC
319 GTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCTCATTCC
* * *
4407 TTCGATCAA-TTTTCGAACATTCCATGTTCGGGAAATCGCATCATTTGGTC
383 ATCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * *
4457 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAGTTAAAAACTTATTTACGTAAGAAT
1 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
4522 TGTTTCTCTCTTTGTTCT
66 TGTTTCTCTCTTTGTTCT
4540 AGGA
Statistics
Matches: 3362, Mismatches: 505, Indels: 186
0.83 0.12 0.05
Matches are distributed among these distances:
416 26 0.01
417 39 0.01
418 156 0.05
419 55 0.02
420 5 0.00
421 26 0.01
422 47 0.01
423 1 0.00
425 2 0.00
428 2 0.00
429 8 0.00
430 226 0.07
431 873 0.26
432 189 0.06
433 463 0.14
434 1034 0.31
435 204 0.06
436 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (433 bp):
TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCCACGAGCAATTTTCTGAACATTCCATGCTC
GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCTCATTCCATCGAGCA
ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
Found at i:1899 original size:865 final size:864
Alignment explanation
Indices: 1--4539 Score: 5482
Period size: 865 Copynumber: 5.3 Consensus size: 864
* * * * *
1 TGAGAATTGTTTCTCCCTTGGTTCATGGATGAACTTTCAAACTTGTCAAACTTTTACGAGTTCCT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * * * * *
66 TTATAGCTTTTTGGTTCCTTAATGTATTCAATATGATCCAATCCTTTGCA-CAA-CTTTCCAA-A
66 TTATAAC---TTCGATCCTTAAAGTATTCAAGAAGATCCATTCCTTCG-AGCAATTTTTCGAACA
* * *
128 --CCATGCTTAGGAAATCG---CA-----T-TAAATAGTTTGTCATTTTGCAAACAAGTTTTGGT
127 TTCCATACTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * *
182 CTTTGGATTAAAAACTTATTT-CCTCGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGC
192 CTTTGAATTAAAAACTTATTTACGT-GAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGA
* * * * * * * *
244 ACTTGTTAAACTTGTACGAGTT-GTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATTCATT-
256 ACTTGTCAAACTTTTACGAGTTATTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTC
** * * *
307 CCATTCGAGCAATTTTTTCAACATTCCACGTTCGGGAAATCGCATCATTTGGTCTAAACAGTTTG
321 CCA-T-GAGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
372 TCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAAATTATTTACATGAGAATTGTTTCTCTCT
384 TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
** * *
437 TGGTTAATGGACGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTTATTGCTT
449 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTT
* * *
502 AAAGTATTCAATACGATCTATATTCCATCGAGCAATTTTTTGAACAGTCCATGCTCGGGGAATCG
514 AAAGTATTCAAGACGATCTACATTCCATCGAGCAATTTTTCGAACAGTCCATGCTCGGGGAATCG
* * * * *
567 CATCATTTGGTCTAACCAGTTTCTCAATTTATAAACAAGTTTTAGTTTTTGAATTAAAAACTTAT
579 CATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * *
632 TTACGTGAAAATTATTTGTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAG
644 TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAG
* * ** *
697 TTCTTTTATAACTTTGGATACTTAAAGTATTCAAGGTGATCCATTCCATCGAGCAATTTTTCGAA
709 TTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCATCGAGCAATTTTTCGAA
* * * * * *
762 CATTCCATGATCTGGAAATTGCATCATTTGATCTTAATAGTTTGTCATTTCGTAAACAAGTTTTG
774 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
*
827 GTCATTGAATTAAAAACTTATTTACG
839 GTCTTTGAATTAAAAACTTATTTACG
* * *
853 TGAGAATTGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * *
918 TTATAACTTCGATTCCTTAAAGTATTCAAG-ACATCCATTCCTTTGATCAATTTTCCAAACATTC
66 TTATAACTTCGA-TCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * * * * *
982 GATGCTTGAGAAATCGCATCATTAGGTCTAAATAGTTTTTCATTTCGTAAATAAGTTTTGGTCTT
130 CATACTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * **
1047 TAAATTATAAACTTTTTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACCAACTTCCGAACTT
195 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGAACTT
* * *
1112 GTCAAAATTTTACGAGTTATTTTTAACTTCGGTTCCCTAAAGTATTCAAGAAGATCCATTCCCAC
260 GTCAAACTTTTACGAGTTATTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCAT
** * * *
1177 GAGCAATTTTCTGAACATTCCATGCTCGGGAAATTGCATCGTTTGGTCTAAATAGTTCGTCATTT
325 GAGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * **
1242 TGTAAACATGTTTTAGTCTTTGAATTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTATTT
390 TGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
* *
1307 CTTGGACGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTACAGT
454 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTAAAGT
* * *
1372 ATTCAAGACGATCTACGTCCCATCGAGCAATTTTTCGAGCAGTCCATGCTCGGGGAATCGCATCA
519 ATTCAAGACGATCTACATTCCATCGAGCAATTTTTCGAACAGTCCATGCTCGGGGAATCGCATCA
* *
1437 TTTGGTCTAAATAGTTTGTCAATTTGTAAAAAAGTTTTGGTCTTT-AAGTTAAAAACTTATTTAC
584 TTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTAC
* * *
1501 GTGAGAATTGTTTCACTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACTAGTTCT
648 GTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCT
* *
1566 TTTATAACTTCGGATCCTTAAAGTATTCAAGATGATTCATTCCTTCGAGCAA-TTTTCGAACATT
713 TTTATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCATCGAGCAATTTTTCGAACATT
* * *
1630 CCATGTTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCT
778 CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
*
1695 TTGAGTTAAAAACTTATTTACG
843 TTGAATTAAAAACTTATTTACG
* * * * *
1717 TAAGAATTGTTTCTCTCTTTGTTCTAGGATGAATTTTCGATCTTGTCAAACTTTTACGAGTTATT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* *
1782 TTTTAACTTCGATTCCTTAAAGTATTCAACAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
66 TTATAACTTCGA-TCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * *
1847 CATACTTGGGAAATTGCATCATTTGTTCTAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTCTT
130 CATACTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * *
1912 TGAATTATAAACTT-TGTTACGTGAGAATTATTTCTCTCGTAGTTCTTGGACAAACTTCTGAACT
195 TGAATTAAAAACTTAT-TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGAACT
* * * *
1976 TGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCATAAAGTTTTCAAGAAGATCCACT-CC
259 TGTCAAACTTTTACGAGTTA-TTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCC
* * * * *
2040 ATGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTGAATAGTTCGTCAT
323 ATGAGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* * * *
2105 TTTGTAAACAAGTTTTAGTCTCTGAATTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGT
388 TTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG
* *
2170 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTACTTTTATAACTTCTATTGCTTAAA
452 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTAAA
** * * * *
2235 GTATTCAAGACGATCTATGTTCCATTGAGCAA-TTTTCGAGCAGTCCATGCTCGGAGAATCGAAT
517 GTATTCAAGACGATCTACATTCCATCGAGCAATTTTTCGAACAGTCCATGCTCGGGGAATCGCAT
*
2299 CATTTGGTCTAAACAGTTTGTCAATTTGTAAATAAGTTTTGGTCTTTGAATTAAAAACTTATATT
582 CATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT-TT
*
2364 --GTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTTTACTAGT
646 ACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC-TTTTACTAGT
* ** * *
2427 TCTTTTATAACTTCGGATCCTTAAAGCATTCAAGACGAACCATTCCTTC-ACGCAATTTTTCAAA
710 TCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCATCGA-GCAATTTTTCGAA
* *
2491 CATTCTATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTCGTAAACAAGTTTTG
774 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
*
2556 GTCTTTTGAATTAAAAACCTATTTACG
839 GTC-TTTGAATTAAAAACTTATTTACG
* *
2583 TGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * *
2648 TTATAACTTCGGATCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAACAATTTTTCGAAAATTC
66 TTATAACTTC-GATCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * *
2713 CATTCTTGGGAAATCGCATCATTTGGTCTAAACAGTTCGTCATTTTGTAAACAAGTTTTGGTCTT
130 CATACTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * * * *
2778 TGAA-TAAAAATCTTATTAACCTGAGAATTGTTTCTCCCTTGGTTCATGGATGAACTTTCAAACT
195 TGAATTAAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGAACT
* * * * * * * *
2842 TGTCAAACTTTTACGAGTTCCTTTATAGCTTTTTGGTTCCTTAATGTATTCAATATGATCCAATC
259 TGTCAAACTTTTACGAGTT-ATTTTTAAC--TTCGGTTCCTTAAAGTATTCAAGAAGATCCATTC
** * **
2907 CTTTGCA-CAACTTT-CCAA-A--CCATGCTTAGGAAATCG---CA-----T-TAAATAGTTTGT
321 CCATG-AGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
2958 CATTTTGCAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTT-CCTCGAGAATTG-TT-TCTCT
385 CATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACAT-GAGAATTGTTTCTCTCT
* * * * * * * *
3020 TGGTTCTTGGATGAACTTTCGCACTTGTTAAACTTGTACGAG-T-TGTTATAAATT-TGGTTCCT
449 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-ATTGCT
* * * * *
3082 TAAAGTATTCAAGATGAT-T-CATTCCATTCGAGCAATTTTTTC-AACATTCCACGTTCGGGAAA
513 TAAAGTATTCAAGACGATCTACATTCCA-TCGAGCAA-TTTTTCGAACAGTCCATGCTCGGGGAA
* * *
3144 TCGCATCATTTGGTCTAAACAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAAAT
576 TCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * **
3209 TATTTACATGAGAATTGTTTCTCTCTTGGTTAATGGACGAACTTTCGAACTTGTCAAACTTTTAC
641 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
* * ** * * *
3274 GATTTCTTTTATAACTT-TTATTGCTTAAAGTATTCAATACGATCTATATTCCATCGAGCAATTT
706 TAGTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACGAT-T-CATTCCATCGAGCAATTT
* * * ** * * *
3338 TTTGAACAGTCCATGCTCGGGGAATCGCATCATTTGGTCTAACCAGTTTCTCAATTTATAAACAA
768 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
3403 GTTTTAGTTTTTGAATTAAAAACTTATTTACG
833 GTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * *
3435 TGAAAATTATTTGTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * ** *
3500 TTATAACTTTGGATACTTAAAGTATTCAAGGTGATCCATTCCATCGAGCAATTTTTCGAACATTC
66 TTATAAC-TTCGATCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* * * *
3565 CATGA-TCT-GGAAATTGCATCATTTGATCTTAATAGTTTGTCATTTCGTAAACAAGTTTTGGTC
130 CAT-ACT-TGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * *
3628 ATTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCGCTTTGTTCTTGGATAAACTTCCGAAC
193 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGAAC
* * *
3693 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAG-ACATCCATTCC
258 TTGTCAAACTTTTACGAGTTATTTT-TAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCC
** * * * * * *
3757 TTTGATCAATTTTCCAAACATTCGATGCTTGAGAAATCGCATCATTAGGTCTAAATAGTTTGTCA
322 CATGAGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* * * * *
3822 TTTTGTAAATAAGTTTTGGTCTTTAAATTATAAACTTTTTTACATGAGAATTGTTTCTCTCTTAG
387 TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG
* * * * ** * *
3887 TTCTTGGACCAACTTCCGAACTTGTCAAAATTTTACGAGTTATTTT-TAACTTCGGTTCCCTAAA
452 TTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTAAA
* * * *
3951 GTATTCAAGAAGATC--CATTCCCA-CGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATTGC
517 GTATTCAAGACGATCTACATT-CCATCGAGCAATTTTTC-GAACAGTCCATGCTCGGGGAATCGC
* * * * * *
4012 ATCGTTTGGTCTAAATAGTTCGTCATTTTGTAAACATGTTTTAGTCTTTGAATTTAAAAACTTAT
580 ATCATTTGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAA-TTAAAAACTTAT
* *
4077 TTACGTGAGAATTGTTTCTCTCTTAT-TTCTTGGACGAACTTTCAAACTTGTCAAACTTTTACGA
644 TTACGTGAGAATTGTTTCTCTCTT-TGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTA
* * * *
4141 GTTCTTTTATAACTTCTGTTGCTTAAAGTATTCAAGACGATCTACATCCCATCGAGCAATTTTTC
708 GTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGAT-T-CATTCCATCGAGCAATTTTTC
* * * * * *
4206 GAGCAGTCCATGCTCGGGGAATCGCATCATTTGGTCTAAACAGTTTGTCAATTTGTAAAAAAGTT
771 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
4271 TTGGTCTTT-AAGTTAAAAACTTATTTACG
836 TTGGTCTTTGAA-TTAAAAACTTATTTACG
* * *
4300 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTTACTAGTTCTT
1 TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* * *
4365 TTATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCTTCGATCAA-TTTTCGAACATTC
66 TTATAACTTC-GATCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTC
* *
4429 CAT-GTTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCT
130 CATACTT-GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * *
4493 TTGAGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCT
194 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCT
4540 AGGA
Statistics
Matches: 3204, Mismatches: 396, Indels: 162
0.85 0.11 0.04
Matches are distributed among these distances:
848 2 0.00
849 41 0.01
850 54 0.02
851 152 0.05
852 379 0.12
853 153 0.05
854 5 0.00
855 22 0.01
856 39 0.01
857 1 0.00
861 2 0.00
862 120 0.04
863 58 0.02
864 670 0.21
865 1154 0.36
866 310 0.10
867 4 0.00
868 28 0.01
869 9 0.00
870 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (864 bp):
TGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCGATCCTTAAAGTATTCAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTCC
ATACTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATAAACTTCCGAACTTG
TCAAACTTTTACGAGTTATTTTTAACTTCGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCATG
AGCAATTTTCCCAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
GTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTATTGCTTAAAGTAT
TCAAGACGATCTACATTCCATCGAGCAATTTTTCGAACAGTCCATGCTCGGGGAATCGCATCATT
TGGTCTAAACAGTTTGTCAATTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTT
ATAACTTCGGATCCTTAAAGTATTCAAGACGATTCATTCCATCGAGCAATTTTTCGAACATTCCA
TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTG
AATTAAAAACTTATTTACG
Done.