Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006540.1 Kokia drynarioides strain JFW-HI SEQ_121125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2167
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32


Found at i:1781 original size:33 final size:33

Alignment explanation


    Indices: 1743--1810  Score: 118
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       1733 ACAAATTACT

                         *                   
       1743 CATCACTATCAGACCACAAACAAACATTTAATA
          1 CATCACTATCAGAACACAAACAAACATTTAATA

                                   *         
       1776 CATCACTATCAGAACACAAACAAGCATTTAATA
          1 CATCACTATCAGAACACAAACAAACATTTAATA

              
       1809 CA
          1 CA

       1811 ACATAGGTAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.49, C:0.26, G:0.04, T:0.21


Consensus pattern (33 bp):   
CATCACTATCAGAACACAAACAAACATTTAATA
Done.