Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006546.1 Kokia drynarioides strain JFW-HI SEQ_121131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6702
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:4465 original size:19 final size:19

Alignment explanation


    Indices: 4430--4474  Score: 56
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       4420 AGTTAAAAGA

                             *  
       4430 AGTTGAATATAGTTACTGTC
          1 AGTTG-ATATAGTTACTATC

                                
       4450 AGTTGATATACG-TACTATC
          1 AGTTGATATA-GTTACTATC

                  
       4469 AGTTGA
          1 AGTTGA

       4475 AGTCAGTTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  19   17  0.74
  20    6  0.26

ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38


Consensus pattern (19 bp):   
AGTTGATATAGTTACTATC
Done.