Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006547.1 Kokia drynarioides strain JFW-HI SEQ_121132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5244
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:78 original size:19 final size:20

Alignment explanation


    Indices: 55--100  Score: 60
    Period size: 19  Copynumber: 2.4  Consensus size: 20

         45 TTTAACTGAC

                     *           
         55 TTCAACTGATAGT-ACGTATA
          1 TTCAACTGACAGTAAC-TATA

                                
         75 -TCAACTGACAGTAACTATA
          1 TTCAACTGACAGTAACTATA

                   
         94 TTCAACT
          1 TTCAACT

        101 TCTTTTAACT


Statistics
Matches: 23,  Mismatches: 1, Indels: 4
        0.82            0.04        0.14

Matches are distributed among these distances:
  19   15  0.65
  20    8  0.35

ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33


Consensus pattern (20 bp):   
TTCAACTGACAGTAACTATA
Done.