Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006549.1 Kokia drynarioides strain JFW-HI SEQ_121134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4786
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Found at i:2657 original size:215 final size:215
Alignment explanation
Indices: 2286--2716 Score: 844
Period size: 215 Copynumber: 2.0 Consensus size: 215
2276 AAGGCAAAAG
2286 TACCGAAAGGACAAGTGAAAGTCATTTTTTCTTGGTCCTTCGATGTAATTTCTATCTGATTGTAG
1 TACCGAAAGGACAAGTGAAAGTCATTTTTTCTTGGTCCTTCGATGTAATTTCTATCTGATTGTAG
2351 CATTCACAAAGGACCATAGGTGCAGTCCAACAAAGGACCATTCACAGATGCATCGACAAGATTTC
66 CATTCACAAAGGACCATAGGTGCAGTCCAACAAAGGACCATTCACAGATGCATCGACAAGATTTC
* *
2416 TTGTTTGCGTATTCAACCCATTATAAAAAATCTCGATCTACATTTCCTGTTGAATTCCATGCATG
131 TTATTTGCGCATTCAACCCATTATAAAAAATCTCGATCTACATTTCCTGTTGAATTCCATGCATG
2481 GGACAGCATTGAAGTAGGGT
196 GGACAGCATTGAAGTAGGGT
2501 TACCGAAAGGACAAGTGAAAGTCATTTTTTCTTGGTCCTTCGATGTAATTTCTATCTGATTGTAG
1 TACCGAAAGGACAAGTGAAAGTCATTTTTTCTTGGTCCTTCGATGTAATTTCTATCTGATTGTAG
2566 CATTCACAAAGGACCATAGGTGCAGTCCAACAAAGGACCATTCACAGATGCATCGACAAGATTTC
66 CATTCACAAAGGACCATAGGTGCAGTCCAACAAAGGACCATTCACAGATGCATCGACAAGATTTC
2631 TTATTTGCGCATTCAACCCATTATAAAAAATCTCGATCTACATTTCCTGTTGAATTCCATGCATG
131 TTATTTGCGCATTCAACCCATTATAAAAAATCTCGATCTACATTTCCTGTTGAATTCCATGCATG
2696 GGACAGCATTGAAGTAGGGT
196 GGACAGCATTGAAGTAGGGT
2716 T
1 T
2717 TTCTAATGCT
Statistics
Matches: 214, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
215 214 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (215 bp):
TACCGAAAGGACAAGTGAAAGTCATTTTTTCTTGGTCCTTCGATGTAATTTCTATCTGATTGTAG
CATTCACAAAGGACCATAGGTGCAGTCCAACAAAGGACCATTCACAGATGCATCGACAAGATTTC
TTATTTGCGCATTCAACCCATTATAAAAAATCTCGATCTACATTTCCTGTTGAATTCCATGCATG
GGACAGCATTGAAGTAGGGT
Done.